Evidence map›Paper›PMID 15078937›Full record

ArticleJournal of virology2004

Epistatic effects of immunoglobulin GM and KM allotypes on outcome of infection with hepatitis C virus.

Janardan P Pandey, Jacquie Astemborski, David L Thomas

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

  1. Trial
  2. Review
  3. Epistatic effects of immunoglobulin KM (κ marker) allotypes andJournal of Alzheimer's disease : JAD · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Janardan P PandeyDepartment of Microbiology and Immunology, Medical University of South Carolina, Charleston, South Carolina 29425-2230, USA. pandeyj@musc.edu
Jacquie Astemborski
David L Thomas
Johns Hopkins Medicine · USJohns Hopkins University · USMedical University of South Carolina · US

Funding

HIV and Hepatitis C Pathogenesis & The Human GenomeR01DA013324 · NIDA · JOHNS HOPKINS UNIVERSITY · PI THOMAS, DAVID L · 1999 to 2018
$12.0M
NATURAL HISTORY OF HIV INFECTION IN INJECTION DRUG USERSR37DA004334 · NIDA · JOHNS HOPKINS UNIVERSITY · PI KIRK, GREGORY D · 1997 to 2006
$9.0M
THE NATURAL HISTORY OF HIV INFECTION AMONG DRUG USERSR01DA004334 · NIDA · JOHNS HOPKINS UNIVERSITY · PI KIRK, GREGORY D · 1987 to 2011
$7.6M
Natural History of HIV Infection In Injection Drug UsersR56DA004334 · NIDA · JOHNS HOPKINS UNIVERSITY · PI KIRK, GREGORY D · 2012 to 2013
$3.2M
HEPATITIS C CLEARANCE AND HOST GENETIC FACTORSK08DA000441 · NIDA · JOHNS HOPKINS UNIVERSITY · PI THIO, CHLOE L · 2000 to 2004
$634k
Dopamine Uptake MechanismsZ01DA000441 · NIDA · NATIONAL INSTITUTE ON DRUG ABUSE · PI WISE, ROY · 2000 to 2003
–
Intramural NIH HHS Z01 DA000441NIDA NIH HHS DA00441NIDA NIH HHS DA04334NIDA NIH HHS DA13324NIDA NIH HHS K08 DA000441NIDA NIH HHS R01 DA004334NIDA NIH HHS R01 DA013324NIDA NIH HHS R37 DA004334NIDA NIH HHS R56 DA004334
6 · The paper itself

Abstract

Immunoglobulin GM and KM allotypes-genetic markers of gamma and kappa chains, respectively-are associated with immune responsiveness to several infectious pathogens and with survival in certain viral epidemics. We hypothesized that GM and KM allotypes affect the outcome of hepatitis C virus (HCV) infection. To test this hypothesis, we serologically allotyped 100 persons with well-documented clearance of HCV infection and 198 matched persistently infected persons. None of the GM or KM phenotypes by itself was associated with the clearance or persistence of HCV infection. Particular combinations of these phenotypes, however, were significantly associated with the outcome of HCV infection. Subjects with GM 1,17 5,13 and KM 1,3 phenotypes were over three times (odds ratio [OR], 3.57; 95% confidence interval [CI], 1.44 to 8.87) as likely to clear the infection as the subjects who lacked these phenotypes. This GM phenotype had a similar association with clearance in the absence of KM 3 (OR, 2.75; 95% CI, 1.21 to 6.23). The presence of GM 1,3,17 23 5,13 phenotype (in the absence of KM 3) was associated with persistence (OR, 0.21; 95% CI, 0.06 to 0.77), while its absence (in the presence of KM 1,3) was associated with the clearance of infection (OR, 2.03; 95% CI, 1.16 to 3.54). These results show epistatic interactions of genes on chromosomes 14 (GM) and 2 (KM) in influencing the outcome of an HCV infection. Further investigations involving candidate genes (GM, KM, HLA, and Fcgamma receptors) and cellular and humoral immune responses to HCV epitopes are needed to understand the mechanisms underlying these associations.

Indexed as

AdultCase-Control StudiesFemaleHepacivirusHepatitis CHepatitis C AntibodiesHepatitis C, ChronicHumansImmunoglobulin AllotypesImmunoglobulin Gm AllotypesMaleMiddle AgedPhenotypeRNA, ViralHepatitis C AntibodiesImmunoglobulin AllotypesImmunoglobulin Gm AllotypesRNA, Viral

Identifiers

PMID15078937
PMCPMC387702
OpenAlexW2125958579

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.