Evidence map›Paper›PMID 15078901›Full record

ArticleThe Journal of cell biology2004

Misfolded proteins are sorted by a sequential checkpoint mechanism of ER quality control.

Shilpa Vashist, Davis T W Ng

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 250 papers.

0numbers the graph read from it
0cells of the map it votes in
250citing papers in PubMed
12.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

250 citing papers in PubMed, 458 citations in OpenAlex.

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190 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Shilpa VashistDepartment of Biochemistry and Molecular Biology, 408 South Frear Laboratory, Pennsylvania State University, University Park, PA 16802, USA.
Davis T W Ng
Pennsylvania State University · US

Funding

CELLULAR TOLERANCE MECHANISM OF ABERRANT PROTEINSR01GM059171 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI NG, DAVIS T.W. · 1999 to 2004
$1.1M
NIGMS NIH HHS GM059171NIGMS NIH HHS R01 GM059171
6 · The paper itself

Abstract

Misfolded proteins retained in the endoplasmic reticulum (ER) are degraded by the ER-associated degradation pathway. The mechanisms used to sort them from correctly folded proteins remain unclear. Analysis of substrates with defined folded and misfolded domains has revealed a system of sequential checkpoints that recognize topologically distinct domains of polypeptides. The first checkpoint examines the cytoplasmic domains of membrane proteins. If a lesion is detected, it is retained statically in the ER and rapidly degraded without regard to the state of its other domains. Proteins passing this test face a second checkpoint that monitors domains localized in the ER lumen. Proteins detected by this pathway are sorted from folded proteins and degraded by a quality control mechanism that requires ER-to-Golgi transport. Although the first checkpoint is obligatorily directed at membrane proteins, the second monitors both soluble and membrane proteins. Our data support a model whereby "properly folded" proteins are defined biologically as survivors that endure a series of distinct checkpoints.

Indexed as

Protein FoldingEndoplasmic ReticulumGlycoproteinsGolgi ApparatusIntracellular MembranesMannosidasesMembrane ProteinsMolecular ChaperonesPeptidesProtein Processing, Post-TranslationalProteinsProtein Structure, TertiaryProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionGlycoproteinsMannosidasesMembrane ProteinsMNL1 protein, S cerevisiaeMolecular ChaperonesPeptidesProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID15078901
PMCPMC2172089
OpenAlexW1984347348

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.