ReviewCurrent protein & peptide science2004
New advances in normal mode analysis of supermolecular complexes and applications to structural refinement.
Review in Current protein & peptide science, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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Who cites it
31 citing papers in PubMed.
- Peptide Inhibitors Targeting the Neisseria gonorrhoeae Pivotal Anaerobic Respiration Factor AniA.Antimicrobial agents and chemotherapy · 2017Article
- The Intrinsic Dynamics and Unfolding Process of an Antibody Fab Fragment Revealed by Elastic Network Model.International journal of molecular sciences · 2015Article
- Bridging between NMA and Elastic Network Models: Preserving All-Atom Accuracy in Coarse-Grained Models.PLoS computational biology · 2015Article
- PIM: phase integrated method for normal mode analysis of biomolecules in a crystalline environment.Journal of molecular biology · 2013Article
- Localized lipid packing of transmembrane domains impedes integrin clustering.PLoS computational biology · 2013Article
- Motion and flexibility in human cytochrome p450 aromatase.PloS one · 2012Article
- Accurate prediction of the bound form of the Akt pleckstrin homology domain using normal mode analysis to explore structural flexibility.Journal of chemical information and modeling · 2011Article
- Group theory and biomolecular conformation: I. Mathematical and computational models.Journal of physics. Condensed matter : an Institute of Physics journal · 2010Review
- A molecular dynamics investigation of vinculin activation.Biophysical journal · 2010Article
- Shape-Dependent Global Deformation Modes of Large Protein Structures.Journal of molecular structure · 2010Article
- Article
- Higher susceptibility to halothane modulation in open- than in closed-channel alpha4beta2 nAChR revealed by molecular dynamics simulations.The journal of physical chemistry. B · 2010Article
- General anesthetic binding to neuronal alpha4beta2 nicotinic acetylcholine receptor and its effects on global dynamics.The journal of physical chemistry. B · 2009Article
- Coarse-grained modeling of allosteric regulation in protein receptors.Proceedings of the National Academy of Sciences of the United States of America · 2009Article
- Molecular mechanics of the alpha-actinin rod domain: bending, torsional, and extensional behavior.PLoS computational biology · 2009Article
- Structural improvement of unliganded simian immunodeficiency virus gp120 core by normal-mode-based X-ray crystallographic refinement.Acta crystallographica. Section D, Biological crystallography · 2009Article
- Signaling pathways of PDZ2 domain: a molecular dynamics interaction correlation analysis.Proteins · 2009Article
- Principles of flexible protein-protein docking.Proteins · 2008Review
- A minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallography.Proceedings of the National Academy of Sciences of the United States of America · 2008Article
- The conformational coupling and translocation mechanism of vitamin B12 ATP-binding cassette transporter BtuCD.Biophysical journal · 2008Article
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Abstract
Normal mode analysis is an effective computational method for studying large-amplitude low-frequency molecular deformations that are ubiquitously involved in the functions of biological macromolecules, especially supermolecular complexes. The recent years have witnessed a substantial advance in methodology development in the field. This review is intended to summarize some of the important advances that enable one to simulate deformations of supermolecular complexes at expended resolution- and length-scales, with particular emphasis on the implications in structural refinement against low- to intermediate-resolution structural data such as those from electron cryomicroscopy and fibre diffraction.
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