Evidence map›Paper›PMID 15077204›Full record

ArticleAmerican journal of human genetics2004

Natural selection and population history in the human angiotensinogen gene (AGT): 736 complete AGT sequences in chromosomes from around the world.

Toshiaki Nakajima, Stephen Wooding, Takuro Sakagami, Mitsuru Emi, Katsushi Tokunaga, Gen Tamiya, Tomoaki Ishigami, Satoshi Umemura, Batmunkh Munkhbat, Feng Jin and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed, 1 pooled it
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 1 synthesis or guideline pooled it, 132 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Natural Selection ofFrontiers in genetics · 2021
    Article
  10. Review
  11. COVID's Razor: RAS Imbalance, the Common Denominator Across Disparate, Unexpected Aspects of COVID-19.Diabetes, metabolic syndrome and obesity : targets and therapy · 2020
    Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
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  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 11 institutions in 4 countries.

Toshiaki NakajimaDivision of Genetic Diagnosis, The University of Tokyo, Tokyo 108-8639, Japan. tnakajim@ims.u-tokyo.ac.jp
Stephen Wooding
Takuro Sakagami
Mitsuru Emi
Katsushi Tokunaga
Gen Tamiya
Tomoaki Ishigami
Satoshi Umemura
Batmunkh Munkhbat
Feng Jin
Jia Guan-Jun
Ikuo Hayasaka
Takafumi Ishida
Naruya Saitou
Karel Pavelka
Jean-Marc Lalouel
Lynn B Jorde
Ituro Inoue
Tokyo University of Science · JPUniversity of Utah · USTokai University · JPYokohama City University · JPBeijing Red Cross Blood Center · CNInstitute of Genetics and Developmental Biology · CNInstitute of Rheumatology · CZNational Institute of Genetics · JPNippon Medical School · JPThe University of Tokyo · JPTokyo University of Pharmacy and Life Sciences · JP

Funding

The Angiotensinogen Gene and Human HypertensionR01HL070048 · NHLBI · UNIVERSITY OF UTAH · PI JORDE, LYNN · 2003 to 2006
$1.3M
NHLBI NIH HHS HL070048NHLBI NIH HHS R01 HL070048
6 · The paper itself

Abstract

Several lines of evidence suggest that patterns of genetic variability in the human angiotensinogen gene (AGT) contribute to phenotypic variability in human hypertension. The A(-6) promoter variant of AGT is associated with higher plasma angiotensinogen levels and increased risk of essential hypertension. The geographic distribution of the A(-6) variant leads to the intriguing hypothesis that the G(-6) promoter variant has been selectively advantageous outside Africa. To test these hypotheses, we investigated the roles of population history and natural selection in shaping patterns of genetic diversity in AGT, by sequencing the entire AGT gene (14400 bp) in 736 chromosomes from Africa, Asia, and Europe. We found that the A(-6) variant is present at higher frequency in African populations than in non-African populations. Neutrality tests found no evidence of a departure from selective neutrality, when whole AGT sequences were compared. However, tests restricted to sites in the vicinity of the A(-6)G polymorphism found evidence of a selective sweep. Sliding-window analyses showed that evidence of the sweep is restricted to sites in tight linkage disequilibrium (LD) with the A(-6)G polymorphism. Further, haplotypes carrying the G(-6) variant showed elevated levels of LD, suggesting that they have risen recently to high frequency. Departures from neutral expectation in some but not all regions of AGT indicate that patterns of diversity in the gene cannot be accounted for solely by population history, which would affect all regions equally. Taken together, patterns of genetic diversity in AGT suggest that natural selection has generally favored the G(-6) variant over the A(-6) variant in non-African populations. However, important localized effects may also be present.

Indexed as

Genetics, PopulationGenetic VariationSelection, GeneticAfricaAngiotensinogenAsiaChromosomes, HumanEuropeGeographyHaplotypesHumansLinkage DisequilibriumMolecular Sequence DataPolymorphism, GeneticAngiotensinogen

Identifiers

PMID15077204
PMCPMC1181984
OpenAlexW2150542380

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.