Evidence map›Paper›PMID 15077201›Full record

ArticleAmerican journal of human genetics2004

Rare autosomal recessive cardiac valvular form of Ehlers-Danlos syndrome results from mutations in the COL1A2 gene that activate the nonsense-mediated RNA decay pathway.

Ulrike Schwarze, Ryu-Ichiro Hata, Victor A McKusick, Hiroshi Shinkai, H Eugene Hoyme, Reed E Pyeritz, Peter H Byers

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in American journal of human genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 1 synthesis or guideline pooled it, 184 citations in OpenAlex.

  1. Vascular phenotypes in nonvascular subtypes of the Ehlers-Danlos syndrome: a systematic review.Genetics in medicine : official journal of the American College of Medical Genetics · 2018
    Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Cardiac health, type I collagen, and aging in theAmerican journal of physiology. Heart and circulatory physiology · 2025
    Article
  7. Update on the Genetics of Osteogenesis Imperfecta.Calcified tissue international · 2024
    Review
  8. Genetic diagnosis of the Ehlers-Danlos syndromes.Medizinische Genetik : Mitteilungsblatt des Berufsverbandes Medizinische Genetik e.V · 2024
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Hypermobile Ehlers-Danlos syndromes: Complex phenotypes, challenging diagnoses, and poorly understood causes.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Review
  16. Article
  17. Loeys-Dietz Syndrome.Advances in experimental medicine and biology · 2021
    Article
  18. Article
  19. Exome Sequencing Reveals a Phenotype Modifying Variant in ZNF528 in Primary Osteoporosis With a COL1A2 Deletion.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2020
    Article
  20. Mechanisms of procollagen and HSP47 sorting during ER-to-Golgi trafficking.Matrix biology : journal of the International Society for Matrix Biology · 2020
    Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Ulrike SchwarzeDepartment of Pathology, University of Washington, Seattle, WA 98195, USA.
Ryu-Ichiro Hata
Victor A McKusick
Hiroshi Shinkai
H Eugene Hoyme
Reed E Pyeritz
Peter H Byers
University of Washington · USChiba University · JPKanagawa Dental University · JPStanford University · USUniversity of Pennsylvania · US

Funding

STRUCTURAL PROTEINS IN DISORDERS OF KERATINIZATIONP01AR021557 · NIAMS · UNIVERSITY OF WASHINGTON · PI STEPHENS, KAREN G · 1986 to 2001
$2.8M
MOLECULAR BASIS OF OSTEOGENESIS IMPERFECTAR01AR041223 · NIAMS · UNIVERSITY OF WASHINGTON · PI BYERS, PETER H. · 1992 to 2005
$1.5M
NIAMS NIH HHS AR21557NIAMS NIH HHS AR41223NIAMS NIH HHS P01 AR021557NIAMS NIH HHS R01 AR041223
6 · The paper itself

Abstract

Splice site mutations in the COL1A2 gene of type I collagen can give rise to forms of Ehlers-Danlos syndrome (EDS) because of partial or complete skipping of exon 6, as well as to mild, moderate, or lethal forms of osteogenesis imperfecta as a consequence of skipping of other exons. We identified three unrelated individuals with a rare recessively inherited form of EDS (characterized by joint hypermobility, skin hyperextensibility, and cardiac valvular defects); in two of them, COL1A2 messenger RNA (mRNA) instability results from compound heterozygosity for splice site mutations in the COL1A2 gene, and, in the third, it results from homozygosity for a nonsense codon. The splice site mutations led to use of cryptic splice donor sites, creation of a downstream premature termination codon, and extremely unstable mRNA. In the wild-type allele, the two introns (IVS11 and IVS24) in which these mutations occurred were usually spliced slowly in relation to their respective immediate upstream introns. In the mutant alleles, the upstream intron was removed, so that exon skipping could not occur. In the context of the mutation in IVS24, computer-generated folding of a short stretch of mRNA surrounding the mutation site demonstrated realignment of the relationships between the donor and acceptor sites that could facilitate use of a cryptic donor site. These findings suggest that the order of intron removal is an important variable in prediction of mutation outcome at splice sites and that folding of the nascent mRNA could be one element that contributes to determination of order of splicing. The complete absence of pro alpha 2(I) chains has the surprising effect of producing cardiac valvular disease without bone involvement.

Indexed as

AdultAgedBase SequenceCodon, NonsenseCollagenCollagen Type IEhlers-Danlos SyndromeExonsFemaleGenes, RecessiveHeart Valve DiseasesHeterozygoteHumansIntronsMaleMiddle AgedCodon, NonsenseCollagenCollagen Type IRNA, MessengerRNA Splice Sites

Identifiers

PMID15077201
PMCPMC1181985
OpenAlexW2131252720

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.