Evidence map›Paper›PMID 15075279›Full record

ArticleEukaryotic cell2004

Transcription initiation and termination on Leishmania major chromosome 3.

Santiago Martínez-Calvillo, Dan Nguyen, Kenneth Stuart, Peter J Myler

Abstract read
In one paragraph

Article in Eukaryotic cell, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed.

  1. Article
  2. RNA synthesis inMicrobiology spectrum · 2025
    Article
  3. Article
  4. Molecular interaction assaysThe journal of venomous animals and toxins including tropical diseases · 2025
    Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Promastigote-to-Amastigote Conversion inPathogens (Basel, Switzerland) · 2022
    Review
  10. Article
  11. Finding Correlations Between mRNA and Protein Levels inFrontiers in cellular and infection microbiology · 2022
    Review
  12. Review
  13. Impact of Genetic Diversity and Genome Plasticity ofFrontiers in cellular and infection microbiology · 2022
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Genes · 2020
    Review
  20. Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Santiago Martínez-CalvilloSeattle Biomedical Research Institute, Seattle, Washington 98109-1651, USA.
Dan Nguyen
Kenneth Stuart
Peter J Myler

Funding

LEISHMANIA GENOMEU01AI040599 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 2000 to 2002
$2.9M
Transcription of Protein-coding Genes in LeishmaniaR01AI053667 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI MYLER, PETER JOHN · 2003 to 2010
$2.8M
LEISHMANIA GENOMER01AI040599 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 1997 to 1999
–
NIAID NIH HHS 1 U AI040599NIAID NIH HHS R01 AI053667
6 · The paper itself

Abstract

Genome projects involving Leishmania and other trypanosomatids have revealed that most genes in these organisms are organized into large clusters of genes on the same DNA strand. We have previously shown that transcription of the entire Leishmania major Friedlin (LmjF) chromosome 1 (chr1) initiates bidirectionally between two divergent gene clusters. Here, we analyze transcription of LmjF chr3, which contains two convergent clusters of 67 and 30 genes, separated by a tRNA gene, with a single divergent protein-coding gene located close to the "left" telomere. Nuclear run-on analyses indicate that specific transcription of chr3 initiates bidirectionally between the single subtelomeric gene and the adjacent 67-gene cluster, close to the "right" telomere upstream of the 30-gene cluster, and upstream of the tRNA gene. Transcription on both strands terminates within the tRNA-gene region. Transient-transfection studies support the role of the tRNA-gene region as a transcription terminator for RNA polymerase II (Pol II) and Pol III, and also for Pol I.

Indexed as

AmanitinsAnimalsArtificial Gene FusionBase SequenceChromosomesDicarboxylic AcidsDNA-Directed RNA PolymerasesDNA, IntergenicDNA, Single-StrandedGenes, ProtozoanLeishmaniaLuciferasesMolecular Sequence DataMultigene FamilyNucleic Acid HybridizationOrganophosphorus CompoundsAmanitinsDicarboxylic AcidsDNA-Directed RNA PolymerasesDNA, IntergenicDNA, Single-StrandedLuciferasesOrganophosphorus CompoundsRNA, MessengerRNA, Transfer, Lystagetitoxin

Identifiers

PMID15075279
PMCPMC387636

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.