Evidence map›Paper›PMID 15070737›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

Evolving potassium channels by means of yeast selection reveals structural elements important for selectivity.

Delphine Bichet, Yu-Fung Lin, Christian A Ibarra, Cindy Shen Huang, B Alexander Yi, Yuh Nung Jan, Lily Yeh Jan

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. International journal of molecular sciences · 2019
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Identification of yeast proteins necessary for cell-surface function of a potassium channel.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Delphine BichetDepartments of Physiology and Biochemistry, Howard Hughes Medical Institute, University of California, San Francisco, CA 94143-0725, USA.
Yu-Fung Lin
Christian A Ibarra
Cindy Shen Huang
B Alexander Yi
Yuh Nung Jan
Lily Yeh Jan
Howard Hughes Medical Institute · USUniversity of California, San Francisco · US

Funding

Genetic Studies of the SynapseR01MH065334 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JAN, LILY Y · 2001 to 2020
$3.8M
Genetic Studies of the SynapseR37MH065334 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JAN, LILY Y · 2006 to 2015
$3.8M
NIMH NIH HHS MH65334NIMH NIH HHS R01 MH065334NIMH NIH HHS R37 MH065334
6 · The paper itself

Abstract

Potassium channels are widely distributed. To serve their physiological functions, such as neuronal signaling, control of insulin release, and regulation of heart rate and blood flow, it is essential that K+ channels allow K+ but not the smaller and more abundant Na+ ions to go through. The narrowest part of the channel pore, the selectivity filter formed by backbone carbonyls of the GYG-containing K+ channel signature sequence, approximates the hydration shell of K+ ions. However, the K+ channel signature sequence is not sufficient for K+ selectivity. To identify structural elements important for K+ selectivity, we randomly mutagenized the G protein-coupled inwardly rectifying potassium channel 3.2 (GIRK2) bearing the S177W mutation on the second transmembrane segment. This mutation confers constitutive channel activity but abolishes K+ selectivity and hence the channel's ability to complement the K+ transport deficiency of Deltatrk1Deltatrk2 mutant yeast. S177W-containing GIRK2 mutants that support yeast growth in low-K+ medium contain multiple suppressors, each partially restoring K+ selectivity to S177W-containing double mutants. These suppressors include mutations in the first transmembrane segment and the pore helix, likely exerting long-range actions to restore K+ selectivity, as well as a mutation of a second transmembrane segment residue facing the cytoplasmic half of the pore, below the selectivity filter. Some of these suppressors also affected channel gating (channel open time and opening frequency determined in single-channel analyses), revealing intriguing interplay between ion permeation and channel gating.

Indexed as

Potassium ChannelsPotassium Channels, Inwardly RectifyingAmino Acid SubstitutionAnimalsG Protein-Coupled Inwardly-Rectifying Potassium ChannelsModels, MolecularMutagenesis, Site-DirectedOocytesPatch-Clamp TechniquesProtein ConformationProtein Structure, SecondaryRestriction MappingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsXenopusG Protein-Coupled Inwardly-Rectifying Potassium ChannelsPotassium ChannelsPotassium Channels, Inwardly RectifyingSaccharomyces cerevisiae Proteins

Identifiers

PMID15070737
PMCPMC384766
OpenAlexW2066510442

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.