ArticleApplied and environmental microbiology2004
Analysis of facultative lithotroph distribution and diversity on volcanic deposits by use of the large subunit of ribulose 1,5-bisphosphate carboxylase/oxygenase.
Article in Applied and environmental microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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35 citing papers in PubMed.
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- Isolation, Genomic Sequence and Physiological Characterization ofApplied and environmental microbiology · 2023Article
- Biogeographic distribution of autotrophic bacteria was more affected by precipitation than by soil properties in an arid area.Frontiers in microbiology · 2023Article
- Basaltic Lava Tube Hosts a Putative Novel Genus in the FamilyMicrobiology resource announcements · 2022Article
- Synergistic Inorganic Carbon and Denitrification Genes Contributed to Nitrite Accumulation in a Hydrogen-Based Membrane Biofilm Reactor.Bioengineering (Basel, Switzerland) · 2022Article
- Effects of Nitrogen Addition on Soil Carbon-Fixing Microbial Diversity on Different Slopes in a Degraded Alpine Meadow.Frontiers in plant science · 2022Article
- Metagenomic analysis reveals rapid development of soil biota on fresh volcanic ash.Scientific reports · 2020Article
- Specific detection of form IA RubisCO genes in chemoautotrophic bacteria.Journal of basic microbiology · 2018Article
- Impact of Seasonal Hypoxia on Activity and Community Structure of Chemolithoautotrophic Bacteria in a Coastal Sediment.Applied and environmental microbiology · 2017Article
- Soil Carbon-Fixation Rates and Associated Bacterial Diversity and Abundance in Three Natural Ecosystems.Microbial ecology · 2017Article
- Effect of simulated tillage on microbial autotrophic CO2 fixation in paddy and upland soils.Scientific reports · 2016Article
- Unique pioneer microbial communities exposed to volcanic sulfur dioxide.Scientific reports · 2016Article
- Analysis of cbbL, nifH, and pufLM in Soils from the Sør Rondane Mountains, Antarctica, Reveals a Large Diversity of Autotrophic and Phototrophic Bacteria.Microbial ecology · 2016Article
- Abundance and Diversity of CO2-Assimilating Bacteria and Algae Within Red Agricultural Soils Are Modulated by Changing Management Practice.Microbial ecology · 2015Article
- Pyrosequencing analysis of a bacterial community associated with lava-formed soil from the Gotjawal forest in Jeju, Korea.MicrobiologyOpen · 2015Article
- Heterotrophic communities supplied by ancient organic carbon predominate in deep fennoscandian bedrock fluids.Microbial ecology · 2015Article
- Cropping systems modulate the rate and magnitude of soil microbial autotrophic CO2 fixation in soil.Frontiers in microbiology · 2015Article
- Comparative molecular analysis of chemolithoautotrophic bacterial diversity and community structure from coastal saline soils, Gujarat, India.BMC microbiology · 2012Article
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Abstract
A 492- to 495-bp fragment of the gene coding for the large subunit of the form I ribulose 1,5-bisphosphate carboxylase/oxygenase (RubisCO) (rbcL) was amplified by PCR from facultatively lithotrophic aerobic CO-oxidizing bacteria, colorless and purple sulfide-oxidizing microbial mats, and genomic DNA extracts from tephra and ash deposits from Kilauea volcano, for which atmospheric CO and hydrogen have been previously documented as important substrates. PCR products from the mats and volcanic sites were used to construct rbcL clone libraries. Phylogenetic analyses showed that the rbcL sequences from all isolates clustered with form IC rbcL sequences derived from facultative lithotrophs. In contrast, the microbial mat clone sequences clustered with sequences from obligate lithotrophs representative of form IA rbcL. Clone sequences from volcanic sites fell within the form IC clade, suggesting that these sites were dominated by facultative lithotrophs, an observation consistent with biogeochemical patterns at the sites. Based on phylogenetic and statistical analyses, clone libraries differed significantly among volcanic sites, indicating that they support distinct lithotrophic assemblages. Although some of the clone sequences were similar to known rbcL sequences, most were novel. Based on nucleotide diversity and average pairwise difference, a forested site and an 1894 lava flow were found to support the most diverse and least diverse lithotrophic populations, respectively. These indices of diversity were not correlated with rates of atmospheric CO and hydrogen uptake but were correlated with estimates of respiration and microbial biomass.
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