Evidence map›Paper›PMID 15064383›Full record

ArticlePlant physiology2004

High-resolution physical mapping in Pennisetum squamulatum reveals extensive chromosomal heteromorphism of the genomic region associated with apomixis.

Yukio Akiyama, Joann A Conner, Shailendra Goel, Daryl T Morishige, John E Mullet, Wayne W Hanna, Peggy Ozias-Akins

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
10.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
  2. Map-Based Cloning of Apomixis Genes in Dandelion (Taraxacum officinale s.l.).Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  3. Genetic Mapping in Apomicts.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  4. Article
  5. Review
  6. Genetic mapping of theFrontiers in plant science · 2023
    Article
  7. Evolution of Transcriptomes in Early-Generation Hybrids of the ApomicticInternational journal of molecular sciences · 2022
    Article
  8. Article
  9. Phylogenetically DistantFrontiers in plant science · 2022
    Article
  10. Article
  11. Article
  12. Plants (Basel, Switzerland) · 2021
    Review
  13. Article
  14. Article
  15. Article
  16. A High-Density Linkage Map of the Forage GrassFrontiers in plant science · 2019
    Article
  17. A Plant-SpecificFrontiers in plant science · 2019
    Article
  18. Review
  19. Seeds of doubt: Mendel's choice of Hieracium to study inheritance, a case of right plant, wrong trait.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yukio AkiyamaDepartment of Horticulture, University of Georgia, Tifton, Georgia 31793-0748, USA.
Joann A Conner
Shailendra Goel
Daryl T Morishige
John E Mullet
Wayne W Hanna
Peggy Ozias-Akins
Texas A&M University · USUniversity of Georgia · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gametophytic apomixis is asexual reproduction as a consequence of parthenogenetic development of a chromosomally unreduced egg. The trait leads to the production of embryos with a maternal genotype, i.e. progeny are clones of the maternal plant. The application of the trait in agriculture could be a tremendous tool for crop improvement through conventional and nonconventional breeding methods. Unfortunately, there are no major crops that reproduce by apomixis, and interspecific hybridization with wild relatives has not yet resulted in commercially viable germplasm. Pennisetum squamulatum is an aposporous apomict from which the gene(s) for apomixis has been transferred to sexual pearl millet by backcrossing. Twelve molecular markers that are linked with apomixis coexist in a tight linkage block called the apospory-specific genomic region (ASGR), and several of these markers have been shown to be hemizygous in the polyploid genome of P. squamulatum. High resolution genetic mapping of these markers has not been possible because of low recombination in this region of the genome. We now show the physical arrangement of bacterial artificial chromosomes containing apomixis-linked molecular markers by high resolution fluorescence in situ hybridization on pachytene chromosomes. The size of the ASGR, currently defined as the entire hemizygous region that hybridizes with apomixis-linked bacterial artificial chromosomes, was estimated on pachytene and mitotic chromosomes to be approximately 50 Mbp (a quarter of the chromosome). The ASGR includes highly repetitive sequences from an Opie-2-like retrotransposon family that are particularly abundant in this region of the genome.

Indexed as

Genome, PlantAmino Acid SequenceChromosomesChromosomes, Artificial, BacterialDNA, PlantDNA Transposable ElementsGenetic MarkersIn Situ Hybridization, FluorescenceMolecular Sequence DataPennisetumPhysical Chromosome MappingRepetitive Sequences, Nucleic AcidReproductionSequence Homology, Amino AcidDNA, PlantDNA Transposable ElementsGenetic Markers

Identifiers

PMID15064383
PMCPMC419846
OpenAlexW2132769951

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.