Evidence map›Paper›PMID 15064370›Full record

ArticlePlant physiology2004

Functional analysis of the final steps of the 1-deoxy-D-xylulose 5-phosphate (DXP) pathway to isoprenoids in plants using virus-induced gene silencing.

Jonathan E Page, Gerd Hause, Maja Raschke, Wenyun Gao, Jürgen Schmidt, Meinhart H Zenk, Toni M Kutchan

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 121 citations in OpenAlex.

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  16. Towards a sustainable bio-based economy: Redirecting primary metabolism to new products with plant synthetic biology.Plant science : an international journal of experimental plant biology · 2018
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  18. Overexpression and Suppression ofFrontiers in plant science · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jonathan E PageLeibniz-Institut für Pflanzenbiochemie, 06120 Halle, Germany. jon.page@nrc-cnrc.gc.ca
Gerd Hause
Maja Raschke
Wenyun Gao
Jürgen Schmidt
Meinhart H Zenk
Toni M Kutchan
Leibniz Institute of Plant Biochemistry · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Isoprenoid biosynthesis in plant plastids occurs via the 1-deoxy-d-xylulose 5-phosphate (DXP) pathway. We used tobacco rattle virus (TRV) to posttranscriptionally silence the expression of the last two enzymes of this pathway, the IspG-encoded (E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase (HDS) and the IspH-encoded isopentenyl/dimethylallyl diphosphate synthase (IDDS), as well as isopentenyl/dimethylallyl diphosphate isomerase (IDI), the enzyme that interconverts IPP and DMAPP. TRV-IspG and TRV-IspH infected Nicotiana benthamiana plants had albino leaves that contained less than 4% of the chlorophyll and carotenoid pigments of control leaves. We applied [(13)C]DXP and [(14)C]DXP to silenced leaves and found that 2-C-methyl-d-erythritol 2,4-cyclodiphosphate accumulated in plants blocked at HDS while DXP, (E)-4-hydroxy-3-methylbut-2-enyl phosphate and (E)-2-methylbut-2-ene-1,4-diol accumulated in IDDS-blocked plants. Albino leaves from IspG- and IspH-silenced plants displayed a disorganized palisade mesophyll, reduced cuticle, fewer plastids, and disrupted thylakoid membranes. These findings demonstrate the participation of HDS and IDDS in the DXP pathway in plants, and support the view that plastid isoprenoid biosynthesis is metabolically and physically segregated from the mevalonate pathway. IDI-silenced plants had mottled white-pale green leaves with disrupted tissue and plastid structure, and showed an 80% reduction in pigments compared to controls. IPP pyrophosphatase activity was higher in chloroplasts isolated from IDI-silenced plants than in control plant chloroplasts. We suggest that a low level of isoprenoid biosynthesis via the DXP pathway can occur without IDI but that this enzyme is required for full function of the DXP pathway.

Indexed as

Alkyl and Aryl TransferasesCarbon-Carbon Double Bond IsomerasesCarbon IsotopesCarbon RadioisotopesCarotenoidsChlorophyllChloroplastsCloning, MolecularDNA, ComplementaryGene Expression Regulation, EnzymologicGene Expression Regulation, PlantGene SilencingMolecular Sequence DataNicotianaPentosephosphatesPhenotype1-deoxylulose 5-phosphateAlkyl and Aryl TransferasesCarbon-Carbon Double Bond IsomerasesCarbon IsotopesCarbon RadioisotopesCarotenoidsChlorophyllDNA, Complementary(E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase, Nicotiana benthamianaisopentenyl-dimethylallyl diphosphate isomerase, Nicotiana benthamianaisopentenyl-dimethylallyl diphosphate synthase, Nicotiana benthamianaPentosephosphatesPlant ProteinsTerpenes

Identifiers

PMID15064370
PMCPMC419817
OpenAlexW2130268808

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.