Evidence map›Paper›PMID 15060042›Full record

ArticleJournal of bacteriology2004

Conserved target for group II intron insertion in relaxase genes of conjugative elements of gram-positive bacteria.

Jack H Staddon, Edward M Bryan, Dawn A Manias, Gary M Dunny

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Enterococcal Genetics.Microbiology spectrum · 2019
    Review
  3. mBio · 2018
    Article
  4. Review
  5. Article
  6. Article
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  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jack H StaddonDepartment of Microbiology, University of Minnesota, Minneapolis, Minnesota 55455, USA.
Edward M Bryan
Dawn A Manias
Gary M Dunny
University of Minnesota · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM008244 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI SHIMIZU, YOJI · 1988 to 2024
$13.6M
TRAINING FOR FUTURE BIOTECHNOLOGY DEVELOPMENTT32GM008347 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI SCHMIDT-DANNERT, CLAUDIA · 1990 to 2021
$11.0M
GENETIC FUNCTIONS OF CONJUGATIVE STREPTOCOCCAL R FACTORR01GM049530 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DUNNY, GARY M · 1992 to 2014
$3.6M
MOLECULAR MECHANISMS OF INFECTIOUS DISEASE TRAININGT32AI007421 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI HAASE, ASHLEY T. · 1995 to 2004
$1.2M
A BACTERIAL GROUP II INTRON INVOLVED IN CONJUGATIONR01GM058279 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DUNNY, GARY M · 1999 to 2002
$595k
NIAID NIH HHS T32 AI007421NIAID NIH HHS T32AI07421NIGMS NIH HHS GM49530NIGMS NIH HHS GM58279NIGMS NIH HHS R01 GM049530NIGMS NIH HHS T32 GM008244NIGMS NIH HHS T32 GM008347NIGMS NIH HHS T32GM08244NIGMS NIH HHS T32GM08347
6 · The paper itself

Abstract

The lactococcal group II intron Ll.ltrB interrupts the ltrB relaxase gene within a region that encodes a conserved functional domain. Nucleotides essential for the homing of Ll.ltrB into an intronless version of ltrB are found exclusively at positions required to encode amino acids broadly conserved in a family of relaxase proteins of gram-positive bacteria. Two of these relaxase genes, pcfG from the enterococcal plasmid pCF10 and the ORF4 gene in the streptococcal conjugative transposon Tn5252, were shown to support Ll.ltrB insertion into the conserved motif at precisely the site predicted by sequence homology with ltrB. Insertion occurred through a mechanism indistinguishable from retrohoming. Splicing and retention of conjugative function was demonstrated for pCF10 derivatives containing intron insertions. Ll.ltrB targeting of a conserved motif of a conjugative element suggests a mechanism for group II intron dispersal among bacteria. Additional support for this mechanism comes from sequence analysis of the insertion sites of the E.c.I4 family of bacterial group II introns.

Indexed as

Conjugation, GeneticGenes, BacterialAmino Acid SequenceBacterial ProteinsDNA NucleotidyltransferasesDNA Transposable ElementsGene TargetingGram-Positive BacteriaIntronsMolecular Sequence DataMutagenesis, InsertionalOpen Reading FramesPlasmidsProtein Structure, TertiarySequence AlignmentBacterial ProteinsDNA NucleotidyltransferasesDNA relaxaseDNA Transposable ElementsLtrB protein, Lactococcus lactis

Identifiers

PMID15060042
PMCPMC412114
OpenAlexW2045134797

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.