Evidence map›Paper›PMID 15060033›Full record

ArticleJournal of bacteriology2004

Characterization of the cis-acting regulatory element controlling HrpB-mediated activation of the type III secretion system and effector genes in Ralstonia solanacearum.

Sébastien Cunnac, Christian Boucher, Stéphane Genin

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
10.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 111 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Complete genome sequence of an Israeli isolate ofFrontiers in plant science · 2023
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  5. Comparative genomic analysis ofFrontiers in plant science · 2023
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  6. Expression of theBiology · 2022
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  7. The NEL Family of Bacterial E3 Ubiquitin Ligases.International journal of molecular sciences · 2022
    Review
  8. Plant immunity: Rice XA21-mediated resistance to bacterial infection.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Molecular identification and biological control ofSaudi journal of biological sciences · 2021
    Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. A TAL effector-like protein of an endofungal bacterium increases the stress tolerance and alters the transcriptome of the host.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Review
  16. International journal of molecular sciences · 2020
    Article
  17. Article
  18. Article
  19. Complete Genome Sequence of Sequevar 14MFrontiers in microbiology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Sébastien CunnacLaboratoire Interactions Plantes-Microorganismes, CNRS-INRA, UMR2594, BP27, 31326 Castanet-Tolosan, France.
Christian Boucher
Stéphane Genin
Laboratoire des Interactions Plantes Micro-Organismes · FRInfection et inflammation

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability of Ralstonia solanacearum to cause disease on plants depends on its type III secretion system (TTSS) encoded by hrp genes. The expression of hrp genes and known TTSS substrates is coordinately regulated by HrpB, a member of the AraC family of transcriptional regulators. Two HrpB-regulated promoters (hrpY and popABC) were characterized by deletion analysis, and the HrpB-dependent activation of these promoters was found to be conferred by a 25-nucleotide DNA element, the hrp(II) box (TTCGn16TTCG), which is present in other hrp promoters. The hrp(II) box element is an imperfect plant inducible promoter box, an element which was originally found in hrp promoters of Xanthomonas campestris (S. Fenselau and U. Bonas, Mol. Plant-Microbe Interact. 8:845-854, 1995) but which was not characterized at the molecular level. Site-directed mutagenesis showed that the hrp(II) box is essential for hrpY promoter activation in vivo. Functional analysis of the hrp(II) box element identified critical parameters that are required for HrpB-dependent activity. Further mapping analyses of several other hrpB-dependent promoters also indicated that the position of the hrp(II) box is conserved, at -70 to -47 bp from the transcriptional start. As a first step toward identifying novel TTSS effectors, we used the hrp(II) box consensus sequence to search for potential HrpB-regulated promoters in the complete genome sequence of R. solanacearum strain GMI1000. Among the 114 genes identified, a subset of promoters was found to have a structural relationship with hrp promoters, thus providing a pool of candidate genes encoding TTSS effectors.

Indexed as

Transcription, GeneticBacterial ProteinsBase SequenceConsensus SequenceDNA-Binding ProteinsGenes, RegulatorGenome, BacterialMolecular Sequence DataPore Forming Cytotoxic ProteinsPromoter Regions, GeneticRalstonia solanacearumSequence AlignmentTranscription FactorsBacterial ProteinsDNA-Binding ProteinshrpB protein, Ralstonia solanacearumPopA1 protein, Ralstonia solanacearumPopB protein, Ralstonia solanacearumPopC protein, Ralstonia solanacearumPore Forming Cytotoxic ProteinsTranscription Factors

Identifiers

PMID15060033
PMCPMC412162
OpenAlexW2151618499

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.