Evidence map›Paper›PMID 15057823›Full record

ArticleNature2004

The DNA sequence and analysis of human chromosome 13.

A Dunham, L H Matthews, J Burton, J L Ashurst, K L Howe, K J Ashcroft, D M Beare, D C Burford, S E Hunt, S Griffiths-Jones and 116 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 1 pooled it
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 1 synthesis or guideline pooled it, 92 citations in OpenAlex.

  1. Pooled it
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  8. Allergen-induced DNA release by the airway epithelium amplifies type 2 immunity.The Journal of allergy and clinical immunology · 2023
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  16. Review
  17. Genome-Wide DNA Alterations in X-Irradiated Human Gingiva Fibroblasts.International journal of molecular sciences · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

126 authors at 1 institution in 1 country.

A DunhamThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, UK. ad1@sanger.ac.uk
L H Matthews
J Burton
J L Ashurst
K L Howe
K J Ashcroft
D M Beare
D C Burford
S E Hunt
S Griffiths-Jones
M C Jones
S J Keenan
K Oliver
C E Scott
R Ainscough
J P Almeida
K D Ambrose
D T Andrews
R I S Ashwell
A K Babbage
C L Bagguley
J Bailey
R Bannerjee
K F Barlow
K Bates
H Beasley
C P Bird
S Bray-Allen
A J Brown
J Y Brown
W Burrill
C Carder
N P Carter
J C Chapman
M E Clamp
S Y Clark
G Clarke
C M Clee
S C M Clegg
V Cobley
J E Collins
N Corby
G J Coville
P Deloukas
P Dhami
I Dunham
M Dunn
M E Earthrowl
A G Ellington
L Faulkner
A G Frankish
J Frankland
L French
P Garner
J Garnett
J G R Gilbert
C J Gilson
J Ghori
D V Grafham
S M Gribble
C Griffiths
R E Hall
S Hammond
J L Harley
E A Hart
P D Heath
P J Howden
E J Huckle
P J Hunt
A R Hunt
C Johnson
D Johnson
M Kay
A M Kimberley
A King
G K Laird
C J Langford
S Lawlor
D A Leongamornlert
D M Lloyd
C Lloyd
J E Loveland
J Lovell
S Martin
M Mashreghi-Mohammadi
S J McLaren
A McMurray
S Milne
M J F Moore
T Nickerson
S A Palmer
A V Pearce
A I Peck
S Pelan
B Phillimore
K M Porter
C M Rice
S Searle
H K Sehra
R Shownkeen
C D Skuce
M Smith
C A Steward
N Sycamore
J Tester
D W Thomas
A Tracey
A Tromans
B Tubby
M Wall
J M Wallis
A P West
S L Whitehead
D L Willey
L Wilming
P W Wray
M W Wright
L Young
A Coulson
R Durbin
T Hubbard
J E Sulston
S Beck
D R Bentley
J Rogers
M T Ross
Wellcome Sanger Institute · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

Chromosome 13 is the largest acrocentric human chromosome. It carries genes involved in cancer including the breast cancer type 2 (BRCA2) and retinoblastoma (RB1) genes, is frequently rearranged in B-cell chronic lymphocytic leukaemia, and contains the DAOA locus associated with bipolar disorder and schizophrenia. We describe completion and analysis of 95.5 megabases (Mb) of sequence from chromosome 13, which contains 633 genes and 296 pseudogenes. We estimate that more than 95.4% of the protein-coding genes of this chromosome have been identified, on the basis of comparison with other vertebrate genome sequences. Additionally, 105 putative non-coding RNA genes were found. Chromosome 13 has one of the lowest gene densities (6.5 genes per Mb) among human chromosomes, and contains a central region of 38 Mb where the gene density drops to only 3.1 genes per Mb.

Indexed as

Physical Chromosome MappingChromosome MappingChromosomes, Human, Pair 13GenesGenetics, MedicalHumansPseudogenesRNA, UntranslatedSequence Analysis, DNARNA, Untranslated

Identifiers

PMID15057823
PMCPMC2665288
OpenAlexW4242931615

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.