Evidence map›Paper›PMID 15057822›Full record

ArticleNature2004

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Richard A Gibbs, George M Weinstock, Michael L Metzker, Donna M Muzny, Erica J Sodergren, Steven Scherer, Graham Scott, David Steffen, Kim C Worley, Paula E Burch and 221 more

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Nature, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 951 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
951citing papers in PubMed, 3 pooled it
133.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

951 citing papers in PubMed, 3 syntheses or guidelines pooled it, 2,201 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Article
  6. Article
  7. A Vein Attempt? Experimental Models for Arteriovenous Fistula Research.Cardiovascular engineering and technology · 2026
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  12. Mapping of EFO terms from the GWAS catalog data to multiple ontologies at the Rat Genome Database.Database : the journal of biological databases and curation · 2026
    Article
  13. Gene function predicts divergence across molecular levels.bioRxiv : the preprint server for biology · 2026
    Article
  14. Article
  15. Article
  16. PervasivebioRxiv : the preprint server for biology · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Review

891 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

231 authors at 20 institutions in 7 countries.

Richard A GibbsHuman Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu
George M Weinstock
Michael L Metzker
Donna M Muzny
Erica J Sodergren
Steven Scherer
Graham Scott
David Steffen
Kim C Worley
Paula E Burch
Geoffrey Okwuonu
Sandra Hines
Lora Lewis
Christine DeRamo
Oliver Delgado
Shannon Dugan-Rocha
George Miner
Margaret Morgan
Alicia Hawes
Rachel Gill
Celera
Robert A Holt
Mark D Adams
Peter G Amanatides
Holly Baden-Tillson
Mary Barnstead
Soo Chin
Cheryl A Evans
Steve Ferriera
Carl Fosler
Anna Glodek
Zhiping Gu
Don Jennings
Cheryl L Kraft
Trixie Nguyen
Cynthia M Pfannkoch
Cynthia Sitter
Granger G Sutton
J Craig Venter
Trevor Woodage
Douglas Smith
Hong-Mei Lee
Erik Gustafson
Patrick Cahill
Arnold Kana
Lynn Doucette-Stamm
Keith Weinstock
Kim Fechtel
Robert B Weiss
Diane M Dunn
Eric D Green
Robert W Blakesley
Gerard G Bouffard
Pieter J De Jong
Kazutoyo Osoegawa
Baoli Zhu
Marco Marra
Jacqueline Schein
Ian Bosdet
Chris Fjell
Steven Jones
Martin Krzywinski
Carrie Mathewson
Asim Siddiqui
Natasja Wye
John McPherson
Shaying Zhao
Claire M Fraser
Jyoti Shetty
Sofiya Shatsman
Keita Geer
Yixin Chen
Sofyia Abramzon
William C Nierman
Paul H Havlak
Rui Chen
K James Durbin
Rain Simons
Yanru Ren
Xing-Zhi Song
Bingshan Li
Yue Liu
Xiang Qin
Simon Cawley
Kim C Worley
A J Cooney
Lisa M D'Souza
Kirt Martin
Jia Qian Wu
Manuel L Gonzalez-Garay
Andrew R Jackson
Kenneth J Kalafus
Michael P McLeod
Aleksandar Milosavljevic
Davinder Virk
Andrei Volkov
David A Wheeler
Zhengdong Zhang
Jeffrey A Bailey
Evan E Eichler
Eray Tuzun
Ewan Birney
Emmanuel Mongin
Abel Ureta-Vidal
Cara Woodwark
Evgeny Zdobnov
Peer Bork
Mikita Suyama
David Torrents
Marina Alexandersson
Barbara J Trask
Janet M Young
Hui Huang
Huajun Wang
Heming Xing
Sue Daniels
Darryl Gietzen
Jeanette Schmidt
Kristian Stevens
Ursula Vitt
Jim Wingrove
Francisco Camara
M Mar Albà
Josep F Abril
Roderic Guigo
Arian Smit
Inna Dubchak
Edward M Rubin
Olivier Couronne
Alexander Poliakov
Norbert Hübner
Detlev Ganten
Claudia Goesele
Oliver Hummel
Thomas Kreitler
Young-Ae Lee
Jan Monti
Herbert Schulz
Heike Zimdahl
Heinz Himmelbauer
Hans Lehrach
Howard J Jacob
Susan Bromberg
Jo Gullings-Handley
Michael I Jensen-Seaman
Anne E Kwitek
Jozef Lazar
Dean Pasko
Peter J Tonellato
Simon Twigger
Chris P Ponting
Jose M Duarte
Stephen Rice
Leo Goodstadt
Scott A Beatson
Richard D Emes
Eitan E Winter
Caleb Webber
Petra Brandt
Gerald Nyakatura
Margaret Adetobi
Francesca Chiaromonte
Laura Elnitski
Pallavi Eswara
Ross C Hardison
Minmei Hou
Diana Kolbe
Kateryna Makova
Webb Miller
Anton Nekrutenko
Cathy Riemer
Scott Schwartz
James Taylor
Shan Yang
Yi Zhang
Klaus Lindpaintner
T Dan Andrews
Mario Caccamo
Michele Clamp
Laura Clarke
Valerie Curwen
Richard Durbin
Eduardo Eyras
Stephen M Searle
Gregory M Cooper
Serafim Batzoglou
Michael Brudno
Arend Sidow
Eric A Stone
J Craig Venter
Bret A Payseur
Guillaume Bourque
Carlos López-Otín
Xose S Puente
Kushal Chakrabarti
Sourav Chatterji
Colin Dewey
Lior Pachter
Nicolas Bray
Von Bing Yap
Anat Caspi
Glenn Tesler
Pavel A Pevzner
David Haussler
Krishna M Roskin
Robert Baertsch
Hiram Clawson
Terrence S Furey
Angie S Hinrichs
Donna Karolchik
William J Kent
Kate R Rosenbloom
Heather Trumbower
Matt Weirauch
David N Cooper
Peter D Stenson
Bin Ma
Michael Brent
Manimozhiyan Arumugam
David Shteynberg
Richard R Copley
Martin S Taylor
Harold Riethman
Uma Mudunuri
Jane Peterson
Mark Guyer
Adam Felsenfeld
Susan Old
Stephen Mockrin
Francis Collins
Rat Genome Sequencing Project Consortium
Baylor College of Medicine · USPennsylvania State University · USMedical College of Wisconsin · USNational Institutes of Health · USNKT Therapeutics (United States) · USUniversity of California, Santa Cruz · USCanada's Michael Smith Genome Sciences Centre · CAEuropean Molecular Biology Organization · DEUniversitat Pompeu Fabra · ESLawrence Berkeley National Laboratory · USWellcome Sanger Institute · GBCentre for Human Genetics · GBMax Delbrück Center · DEThe Wistar Institute · USUniversity of California, Berkeley · USUniversity School · USFred Hutch Cancer Center · USUniversidad de Oviedo · ESAnalysis Group (United States) · USHoward Hughes Medical Institute · US

Funding

RAT GENOME DATABASER01HL064541 · NHLBI · MEDICAL COLLEGE OF WISCONSIN · PI ANNE E. KWITEK · 1999 to 2026
$50.0M
Multi-Species Comparative Sequencing of Targeted GenomicZ01HG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI GREEN, ERIC · 2001 to 2008
$19.1M
Maintenance and Development of RepeatMasker and RepeatModelerR01HG002939 · NHGRI · INSTITUTE FOR SYSTEMS BIOLOGY · PI Robert MacDonald Hubley, Arian Fredericus Anthonius Smit · 2003 to 2026
$9.1M
Structural /Functional Analysis of Mammalian ChromosomesZ01HG000060 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI GREEN, ERIC · 1995 to 2008
$6.8M
END SEQUENCING AND FINGERPRINTING OF MOUSE BAC LIBRARIESU01HG002137 · NHGRI · INSTITUTE FOR GENOMIC RESEARCH · PI ZHAO, SHAYING · 1999 to 2002
$5.3M
NHGRI NIH HHS R01 HG002939NHGRI NIH HHS U01 HG002137NHLBI NIH HHS R01 HL064541
6 · The paper itself

Abstract

The laboratory rat (Rattus norvegicus) is an indispensable tool in experimental medicine and drug development, having made inestimable contributions to human health. We report here the genome sequence of the Brown Norway (BN) rat strain. The sequence represents a high-quality 'draft' covering over 90% of the genome. The BN rat sequence is the third complete mammalian genome to be deciphered, and three-way comparisons with the human and mouse genomes resolve details of mammalian evolution. This first comprehensive analysis includes genes and proteins and their relation to human disease, repeated sequences, comparative genome-wide studies of mammalian orthologous chromosomal regions and rearrangement breakpoints, reconstruction of ancestral karyotypes and the events leading to existing species, rates of variation, and lineage-specific and lineage-independent evolutionary events such as expansion of gene families, orthology relations and protein evolution.

Indexed as

Evolution, MolecularGenomeGenomicsAnimalsBase CompositionCentromereChromosomes, MammalianCpG IslandsDNA, MitochondrialDNA Transposable ElementsGene DuplicationHumansIntronsMaleMiceModels, MolecularDNA, MitochondrialDNA Transposable ElementsRetroelementsRNA Splice SitesRNA, Untranslated

Identifiers

PMID15057822
OpenAlexW2097040991

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.