Evidence map›Paper›PMID 15057275›Full record

ArticleThe EMBO journal2004

p54(nrb) associates with the 5' splice site within large transcription/splicing complexes.

Sei Kameoka, Paula Duque, Maria M Konarska

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 180 citations in OpenAlex.

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  11. Frontiers in molecular biosciences · 2022
    Article
  12. Article
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  14. Open medicine (Warsaw, Poland) · 2021
    Article
  15. Review
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  17. Article
  18. NONO and tumorigenesis: More than splicing.Journal of cellular and molecular medicine · 2020
    Review
  19. Article
  20. Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sei KameokaThe Rockefeller University, New York, NY 10021, USA.
Paula Duque
Maria M Konarska
Rockefeller University · US

Funding

Mechanisms of pre mRNA SplicingR01GM049044 · NIGMS · ROCKEFELLER UNIVERSITY · PI KONARSKA, MAGDA · 1993 to 2012
$5.7M
NIGMS NIH HHS GM 49044NIGMS NIH HHS R01 GM049044
6 · The paper itself

Abstract

The functional coupling of transcription and splicing has been reported both in vivo and in vitro, but the molecular mechanisms governing these interactions remain largely unknown. Here we show that p54(nrb), a transcription/splicing factor, associates with the 5' splice site (SS) within large complexes present in HeLa cell nuclear extracts, in which the hyperphosphorylated form of RNA polymerase II (RNAPIIO) is associated with U1 or U1 and U2 snRNPs. These RNAPIIO-snRNP complexes also contain other transcription/splicing factors, such as PSF and TLS, as well as transcription factors that interact with RNAPIIO during elongation, including P-TEFb, TAT-SF1 and TFIIF. The presence of these factors in functional elongation complexes, demonstrated using an immobilized DNA template assay, strongly suggests that the RNAPIIO-snRNP complexes reflect physiologically relevant interactions between the transcription and splicing machineries. Our finding that both p54(nrb) and PSF, which bind the C-terminal domain of the largest subunit of RNAPII, can interact directly with the 5' SS indicates that these factors may mediate contacts between RNAPII and snRNPs during the coupled transcription/splicing process.

Indexed as

Amino Acid SequenceBase SequenceDNA-Binding ProteinsEndothelial CellsHeLa CellsHumansMolecular Sequence DataNuclear Matrix-Associated ProteinsOctamer Transcription FactorsProtein BindingRibonucleoprotein, U1 Small NuclearRibonucleoprotein, U2 Small NuclearRNA-Binding ProteinsRNA Polymerase IIRNA Splice SitesRNA SplicingDNA-Binding ProteinsNONO protein, humanNuclear Matrix-Associated ProteinsOctamer Transcription FactorsRibonucleoprotein, U1 Small NuclearRibonucleoprotein, U2 Small NuclearRNA-Binding ProteinsRNA Polymerase IIRNA Splice SitesTranscription Factors

Identifiers

PMID15057275
PMCPMC394241
OpenAlexW2037217106

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.