Evidence map›Paper›PMID 15057268›Full record

ArticleGenes and immunity2004

A systematic approach to the assessment of known TNF-alpha polymorphisms in Graves' disease.

M J Simmonds, J M Heward, J M M Howson, H Foxall, R Nithiyananthan, J A Franklyn, S C L Gough

Abstract read
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In one paragraph

Article in Genes and immunity, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 2 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 2 syntheses or guidelines pooled it, 40 citations in OpenAlex.

  1. Pooled it
  2. Association ofBioscience reports · 2018
    Pooled it
  3. Trial
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Recent insights into the pathogenesis and management of thyroid-associated ophthalmopathy.Current opinion in endocrinology, diabetes, and obesity · 2008
    Review
  12. Cytokines, Graves' disease, and thyroid-associated ophthalmopathy.Thyroid : official journal of the American Thyroid Association · 2008
    Review
  13. Article
  14. Article
  15. Article
  16. TNFalpha mediates the skeletal effects of thyroid-stimulating hormone.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

M J SimmondsDivision of Medical Sciences, University of Birmingham, Queen Elizabeth Hospital, Birmingham, UK.
J M Heward
J M M Howson
H Foxall
R Nithiyananthan
J A Franklyn
S C L Gough
Queen Elizabeth Hospital Birmingham · GBHeartlands Hospital · GBJuvenile Diabetes Research Foundation · GBUniversity of Birmingham · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Single-nucleotide polymorphisms (SNPs) within the tumour necrosis factor alpha (TNF-alpha) gene on chromosome 6p21.3 have been associated with many autoimmune diseases; however, results have been conflicting and accurate allele frequencies have never been established in a UK Caucasian population. The aim of this study was to assess the frequency of 22 known TNF-alpha SNPs in a UK Caucasian control population and investigate association of all polymorphisms with >5% minor allele frequency in a large case-control data set of patients with Graves' disease (GD). Eight of the 22 SNPs had minor allele frequencies >5% and were investigated further. The other 14 SNPs were present in the UK population at frequencies ranging from 0 to 4.7%. A significant increase of the A allele of the -238 SNP was seen in GD patients when compared with control subjects (9.6 vs 6.8%, respectively; P=0.003) and mirrored in the genotype distribution (P=0.009). Furthermore, association of the -238 SNP appears not to be due to linkage disequilibrium of the known HLA-DRB1(*)03 associations with GD. This study has established accurate allele frequencies of TNF-alpha SNPs in a UK population and provides preliminary evidence for association of the TNF-alpha gene with GD.

Indexed as

Polymorphism, GeneticCase-Control StudiesGene FrequencyGenotypeGraves DiseaseHumansLinkage DisequilibriumPolymorphism, Single NucleotideSequence Analysis, DNATumor Necrosis Factor-alphaTumor Necrosis Factor-alpha

Identifiers

PMID15057268
OpenAlexW2060329571

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.