ArticleProceedings of the National Academy of Sciences of the United States of America2004
Transcript profiling of early lateral root initiation.
Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.
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Who cites it
83 citing papers in PubMed, 206 citations in OpenAlex.
- PUCHI controls MYB94 and MYB96 to form the root cap cuticle of developing lateral roots.Plant physiology · 2026Article
- Identification of Fibrillarin and Cajal Bodies Under DNA Replication Stress Conditions in Root Meristem Cells ofInternational journal of molecular sciences · 2025Article
- Single-cell RNA sequencing of shoot apex reveals the mechanism of cyclin regulating cell division via auxin signaling pathway inFrontiers in plant science · 2025Article
- The SIAMESE family of cell-cycle inhibitors in the response of plants to environmental stresses.Frontiers in plant science · 2024Review
- Cellular and gene expression patterns associated with root bifurcation in Selaginella.Plant physiology · 2022Article
- Postembryonic Organogenesis in Plants: Experimental Induction of New Shoot and Root Organs.Methods in molecular biology (Clifton, N.J.) · 2022Article
- A single-cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana.The Plant cell · 2021Article
- Auxin-Regulated Lateral Root Organogenesis.Cold Spring Harbor perspectives in biology · 2021Review
- Lateral Root Initiation and the Analysis of Gene Function Using Genome Editing with CRISPR inGenes · 2021Review
- The molecular regulation of cell pluripotency in plants.aBIOTECH · 2020Review
- Fluorescence-Activated Cell Sorting Using the D-Root Device and Optimization for Scarce and/or Non-Accessible Root Cell Populations.Plants (Basel, Switzerland) · 2020Article
- Transcriptome analysis in roots and leaves of wheat seedlings in response to low-phosphorus stress.Scientific reports · 2019Article
- Mepiquat chloride promotes cotton lateral root formation by modulating plant hormone homeostasis.BMC plant biology · 2019Article
- PUCHI regulates very long chain fatty acid biosynthesis during lateral root and callus formation.Proceedings of the National Academy of Sciences of the United States of America · 2019Article
- Auxin-Mediated Cell Cycle Activation during Early Lateral Root Initiation.The Plant cell · 2019Article
- EXPANSIN A1-mediated radial swelling of pericycle cells positions anticlinal cell divisions during lateral root initiation.Proceedings of the National Academy of Sciences of the United States of America · 2019Article
- Intracellularly Localized PIN-FORMED8 Promotes Lateral Root Emergence inFrontiers in plant science · 2019Article
- Hydrogen peroxide acts downstream of melatonin to induce lateral root formation.Annals of botany · 2018Article
- Nitric oxide regulates lateral root formation through modulation of ACC oxidase activity in sunflower seedlings under salt stress.Plant signaling & behavior · 2018Article
- Hydrogen peroxide is involved in hydrogen sulfide-induced lateral root formation in tomato seedlings.BMC plant biology · 2017Article
23 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
10 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
At the onset of lateral root initiation in Arabidopsis thaliana, the phytohormone auxin activates xylem pole pericycle cells for asymmetric cell division. However, the molecular events leading from auxin to lateral root initiation are poorly understood, in part because the few responsive cells in the process are embedded in the root and are thus difficult to access. A lateral root induction system, in which most xylem pole pericycle cells were synchronously activated by auxin transport inhibition followed by auxin application, was used for microarray transcript profiling. Of 4,600 genes analyzed, 906 significantly differentially regulated genes were identified that could be grouped into six major clusters. Basically, three major patterns were discerned representing induced, repressed, and transiently expressed genes. Analysis of the coregulated genes, which were specific for each time point, provided new insight into the molecular regulation and signal transduction preceding lateral root initiation in Arabidopsis. The reproducible expression profiles during a time course allowed us to define four stages that precede the cell division in the pericycle. These early stages were characterized by G1 cell cycle block, auxin perception, and signal transduction, followed by progression over G1/S transition and G2/M transition. All these processes took place within 6 h after transfer from N-1-naphthylphthalamic acid to 1-naphthalene acetic acid. These results indicate that this lateral root induction system represents a unique synchronized system that allows the systematic study of the developmental program upstream of the cell cycle activation during lateral root initiation.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.