Evidence map›Paper›PMID 15051812›Full record

ArticleNucleic acids research2004

Histone 3 lysine 4 methylation during the pre-B to immature B-cell transition.

Eric J Perkins, Barbara L Kee, Dale A Ramsden

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. H3K4me3 induces allosteric conformational changes in the DNA-binding and catalytic regions of the V(D)J recombinase.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  4. Regulated large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. RAG: a recombinase diversified.Nature immunology · 2009
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Epigenetic regulation of tumor necrosis factor alpha.Molecular and cellular biology · 2007
    Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Eric J PerkinsCurriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, NC 27599, USA.
Barbara L Kee
Dale A Ramsden
University of North Carolina at Chapel Hill · US

Funding

Resolution of Complex Breaks by Nonhomologous End JoiningR01CA084442 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RAMSDEN, DALE A · 2000 to 2019
$4.8M
Regulation of Lymphocyte Development by HLH ProteinsR01CA099978 · NCI · UNIVERSITY OF CHICAGO · PI KEE, BARBARA L. · 2003 to 2012
$3.2M
NCI NIH HHS CA84442NCI NIH HHS CA99978NCI NIH HHS R01 CA084442NCI NIH HHS R01 CA099978
6 · The paper itself

Abstract

The relationship between chromatin modification and lymphocyte development is still poorly understood. Here we show a correlation between methylation of lysine 4 on histone 3 (H3-K4) and activation of several loci required for the pre-B cell to immature B-cell developmental transition. A critical step in this transition is the induction of V(D)J recombination at the Igkappa locus. Upon activation of Igkappa recombination, a >10-fold enrichment of both di- and trimethylated H3-K4 is observed at Jkappa targeting signals, but not at an analogous targeting signal in the T-cell receptor alpha locus or, surprisingly, at several Vkappa signals. However, H3-K4 methylation is restricted to the actively recombining fraction of Jkappa recombination targeting signals, consistent with a direct relationship between H3-K4 methylation and signal activity. Correlations between increased H3-K4 methylation and induction of transcription are also observed at some, but not all, loci where transcription is induced. H3-K4 methylation may therefore be a widely used but not universal means for controlling chromatin activity in this developmental transition.

Indexed as

AnimalsB-LymphocytesCell LineageCell Line, TransformedCells, CulturedGene Rearrangement, B-LymphocyteHistonesImmunoglobulin kappa-ChainsLysineMethylationStem CellsHistonesImmunoglobulin kappa-ChainsLysine

Identifiers

PMID15051812
PMCPMC390374
OpenAlexW2021278801

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.