Evidence map›Paper›PMID 15045176›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2004

Fine mapping of the tomato I-3 gene for fusarium wilt resistance and elimination of a co-segregating resistance gene analogue as a candidate for I-3.

M N Hemming, S Basuki, D J McGrath, B J Carroll, D A Jones

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Article
  3. Fine-mapping of a major QTL (Fwr1) for fusarium wilt resistance in radish.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
  4. Linkage between the I-3 gene for resistance to Fusarium wilt race 3 and increased sensitivity to bacterial spot in tomato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  5. Article
  6. Detailed mapping of a resistance locus against Fusarium wilt in cultivated eggplant (Solanum melongena).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016
    Article
  7. Genetic mapping, synteny, and physical location of two loci forMolecular breeding : new strategies in plant improvement · 2014
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Identification and molecular mapping of a Fusarium wilt resistant gene in upland cotton.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009
    Article
  13. Pathogen profile update: Fusarium oxysporum.Molecular plant pathology · 2009
    Review
  14. Article
  15. Development of SRAP, SRAP-RGA, RAPD and SCAR markers linked with a Fusarium wilt resistance gene in eggplant.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008
    Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

M N HemmingPlant Cell Biology, Research School of Biological Sciences, The Australian National University, Canberra ACT 2601, Australia.
S Basuki
D J McGrath
B J Carroll
D A Jones
University of Queensland · AUAustralian National University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The I-3 gene from the wild tomato species Lycopersicon pennellii confers resistance to race 3 of the devastating vascular wilt pathogen Fusarium oxysporum f. sp. lycopersici. As an initial step in a positional cloning strategy for the isolation of I-3, we converted restriction fragment length polymorphism and conserved orthologue set markers, known genes and a resistance gene analogue (RGA) mapping to the I-3 region into PCR-based sequence characterised amplified region (SCAR) and cleaved amplified polymorphic sequence (CAPS) markers. Additional PCR-based markers in the I-3 region were generated using the randomly amplified DNA fingerprinting (RAF) technique. SCAR, CAPS and RAF markers were used for high-resolution mapping around the I-3 locus. The I-3 gene was localised to a 0.3-cM region containing a RAF marker, eO6, and an RGA, RGA332. RGA332 was cloned and found to correspond to a putative pseudogene with at least two loss-of-function mutations. The predicted pseudogene belongs to the Toll interleukin-1 receptor-nucleotide-binding site-leucine-rich-repeat sub-class of plant disease resistance genes. Despite the presence of two RGA332 homologues in L. esculentum, DNA gel blot and PCR analysis suggests that no other homologues are present in lines carrying I-3 that could be alternative candidates for the gene.

Indexed as

Chromosome MappingFusariumAmino Acid SequenceChromosomes, Artificial, BacterialDNA FingerprintingDNA PrimersGenetic MarkersImmunity, InnateMolecular Sequence DataNucleic Acid Amplification TechniquesPlant DiseasesPlant ProteinsPolymorphism, Restriction Fragment LengthPseudogenesReceptors, Interleukin-1Sequence AlignmentDNA PrimersGenetic MarkersPlant ProteinsReceptors, Interleukin-1

Identifiers

PMID15045176
OpenAlexW1998172179

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.