Evidence map›Paper›PMID 15044740›Full record

ArticleProtein science : a publication of the Protein Society2004

Solution structure of a novel calcium binding protein, MTH1880, from Methanobacterium thermoautotrophicum.

Chang-Hun Lee, Jin-Won Jung, Adelinda Yee, Cheryl H Arrowsmith, Weontae Lee

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. The impact of extremophiles on structural genomics (and vice versa).Extremophiles : life under extreme conditions · 2008
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

Chang-Hun LeeDepartment of Biochemistry, College of Science, Yonsei University, 134 Seodaemoon-Gu, Shinchondong, Seoul, Korea 120-749.
Jin-Won Jung
Adelinda Yee
Cheryl H Arrowsmith
Weontae Lee
Zero to Three · USOntario Institute for Cancer Research · CAUniversity of Toronto · CAYonsei University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MTH1880 is a hypothetical protein from Methanobacterium thermoautotrophicum, a target organism of structural genomics. The solution structure determined by NMR spectroscopy demonstrates a typical alpha + beta-fold found in many proteins with different functions. The molecular surface of the protein reveals a small, highly acidic pocket comprising loop B (Asp36, Asp37, Asp38), the end of beta2 (Glu39), and loop D (Ser57, Ser58, Ser61), indicating that the protein would have a possible cation binding site. The NMR resonances of several amino acids within the acidic binding pocket in MTH1880, shifted upon addition of calcium ion. This calcium binding motif and overall topology of MTH1880 differ from those of other calcium binding proteins. MTH1880 did not show a calcium-induced conformational change typical of calcium sensor proteins. Therefore, we propose that the MTH1880 protein contains a novel motif for calcium-specific binding, and may function as a calcium buffering protein.

Indexed as

Amino Acid MotifsAmino AcidsBacterial ProteinsBinding SitesCalciumCalcium-Binding ProteinsMethanobacteriumNuclear Magnetic Resonance, BiomolecularProtein Structure, SecondaryProtein Structure, TertiaryAmino AcidsBacterial ProteinsCalciumCalcium-Binding Proteins

Identifiers

PMID15044740
PMCPMC2280053
OpenAlexW2076196215

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.