Evidence map›Paper›PMID 15042145›Full record

ArticleThe pharmacogenomics journal2004

Comprehensive expression analysis of a rat depression model.

N Nakatani, H Aburatani, K Nishimura, J Semba, T Yoshikawa

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in The pharmacogenomics journal, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 47 citations in OpenAlex.

  1. The Stress-Inducible Protein DRR1 Exerts Distinct Effects on Actin Dynamics.International journal of molecular sciences · 2018
    Article
  2. Differential and converging molecular mechanisms of antidepressants' action in the hippocampal dentate gyrus.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2015
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Natural variation and genetic covariance in adult hippocampal neurogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  9. Old principles in new clothes.The pharmacogenomics journal · 2004
    Article
  10. microRNAs as Biomarker in Depression Pathogenesis.Annals of psychiatry and mental health
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

N NakataniLaboratory for Molecular Psychiatry, RIKEN Brain Science Institute, Wako, Saitama, Japan.
H Aburatani
K Nishimura
J Semba
T Yoshikawa
RIKEN Center for Brain Science · JPThe University of Tokyo · JPThe Open University of Japan · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Herein we report on a large-scale analysis of gene expression in the 'learned helplessness' (LH) rat model of human depression, using DNA microarrays. We compared gene expression in the frontal cortex (FC) and hippocampus (HPC) of untreated controls, and LH rats treated with saline (LH-S), imipramine or fluoxetine. A total of 34 and 48 transcripts were differentially expressed in the FC and HPC, respectively, between control and LH-S groups. Unexpectedly, only genes for NADH dehydrogenase and zinc transporter were altered in both the FC and HPC, suggesting limited overlap in the molecular processes from specific areas of the brain. Principal component analysis revealed that sets of upregulated metabolic enzyme genes in the FC and downregulated genes for signal transduction in the HPC can distinguish clearly between depressed and control animals, as well as explain the responsiveness to antidepressants. This comprehensive data could help to unravel the complex genetic predispositions involved in human depression.

Indexed as

Gene Expression ProfilingHelplessness, LearnedOligonucleotide Array Sequence AnalysisAnimalsAntidepressive AgentsDepressionDisease Models, AnimalFrontal LobeGene Expression RegulationMaleRatsRats, Sprague-DawleyAntidepressive Agents

Identifiers

PMID15042145
OpenAlexW1993788877

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.