Evidence map›Paper›PMID 15042105›Full record

ReviewLeukemia2004

Split-signal FISH for detection of chromosome aberrations in acute lymphoblastic leukemia.

M van der Burg, T S Poulsen, S P Hunger, H B Beverloo, E M E Smit, K Vang-Nielsen, A W Langerak, J J M van Dongen

Abstract readReview
PubMed Publisher
In one paragraph

Review in Leukemia, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Cellular and genomic approaches for exploring structural chromosomal rearrangements.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2020
    Review
  5. Protein methyltransferase inhibitors as precision cancer therapeutics: a decade of discovery.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
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  12. Article
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  15. Article
  16. Article
  17. Article
  18. Review
  19. Diagnostic tool for the identification of MLL rearrangements including unknown partner genes.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

M van der BurgDepartment of Immunology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.
T S Poulsen
S P Hunger
H B Beverloo
E M E Smit
K Vang-Nielsen
A W Langerak
J J M van Dongen
Erasmus MC · NLFlorida College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromosome aberrations are frequently observed in precursor-B-acute lymphoblastic leukemias (ALL) and T-cell acute lymphoblastic leukemias (T-ALL). These translocations can form leukemia-specific chimeric fusion proteins or they can deregulate expression of an (onco)gene, resulting in aberrant expression or overexpression. Detection of chromosome aberrations is an important tool for risk classification. We developed rapid and sensitive split-signal fluorescent in situ hybridization (FISH) assays for six of the most frequent chromosome aberrations in precursor-B-ALL and T-ALL. The split-signal FISH approach uses two differentially labeled probes, located in one gene at opposite sites of the breakpoint region. Probe sets were developed for the genes TCF3 (E2A) at 19p13, MLL at 11q23, ETV6 at 12p13, BCR at 22q11, SIL-TAL1 at 1q32 and TLX3 (HOX11L2) at 5q35. In normal karyotypes, two colocalized green/red signals are visible, but a translocation results in a split of one of the colocalized signals. Split-signal FISH has three main advantages over the classical fusion-signal FISH approach, which uses two labeled probes located in two genes. First, the detection of a chromosome aberration is independent of the involved partner gene. Second, split-signal FISH allows the identification of the partner gene or chromosome region if metaphase spreads are present, and finally it reduces false-positivity.

Indexed as

Chromosome AberrationsProtein-Tyrosine KinasesProto-OncogenesBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsETS Translocation Variant 6 ProteinHistone-Lysine N-MethyltransferaseHumansIn Situ Hybridization, FluorescenceMyeloid-Lymphoid Leukemia ProteinOncogene ProteinsPrecursor Cell Lymphoblastic Leukemia-LymphomaProto-Oncogene ProteinsProto-Oncogene Proteins c-bcrProto-Oncogene Proteins c-etsran GTP-Binding ProteinBasic Helix-Loop-Helix ProteinsBCR protein, humanDNA-Binding ProteinsETS Translocation Variant 6 ProteinHistone-Lysine N-MethyltransferaseKMT2A protein, humanMyeloid-Lymphoid Leukemia ProteinOncogene ProteinsProtein-Tyrosine KinasesProto-Oncogene ProteinsProto-Oncogene Proteins c-bcrProto-Oncogene Proteins c-etsran GTP-Binding ProteinRanGTP-binding protein 17Repressor ProteinsTAL1 protein, humanT-Cell Acute Lymphocytic Leukemia Protein 1TFPT protein, humanTranscription Factors

Identifiers

PMID15042105
OpenAlexW2094828109

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.