Evidence map›Paper›PMID 15041743›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

Stable association between strains of Mycobacterium tuberculosis and their human host populations.

Aaron E Hirsh, Anthony G Tsolaki, Kathryn DeRiemer, Marcus W Feldman, Peter M Small

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 182 papers.

0numbers the graph read from it
0cells of the map it votes in
182citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

182 citing papers in PubMed.

  1. Trial
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  3. Article
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  5. Article
  6. Review
  7. Review
  8. Loss of theScience advances · 2025
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  11. Article
  12. Review
  13. Diversification of gene content in theMicrobiology spectrum · 2024
    Article
  14. Article
  15. Review
  16. Horizontal Gene Transfer and Drug Resistance InvolvingAntibiotics (Basel, Switzerland) · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Article

122 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Aaron E HirshDepartment of Biological Sciences, Stanford University, Stanford, CA 94305, USA. aehirsh@stanford.edu
Anthony G Tsolaki
Kathryn DeRiemer
Marcus W Feldman
Peter M Small

Funding

POPULATION-BASED MOLECULAR EPIDEMIOLOGY OF TUBERCULOSISR01AI034238 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HOPEWELL, PHILIP C · 1993 to 2010
$9.3M
POPULATION GENETICS THEORYR01GM028016 · NIGMS · STANFORD UNIVERSITY · PI FELDMAN, MARCUS W · 1985 to 2010
$2.5M
Molecular vs Conventional Assessment of TB TransmissionK01TW000001 · FIC · UNIVERSITY OF CALIFORNIA DAVIS · PI DERIEMER, KATHRYN · 1999 to 2004
$550k
FIC NIH HHS K01 TW000001NIAID NIH HHS AI34238NIAID NIH HHS R01 AI034238NIGMS NIH HHS GM 28016NIGMS NIH HHS GM 28424NIGMS NIH HHS R01 GM028016
6 · The paper itself

Abstract

Mycobacterium tuberculosis is an important human pathogen in virtually every part of the world. Here we investigate whether distinct strains of M. tuberculosis infect different human populations and whether associations between host and pathogen populations are stable despite global traffic and the convergence of diverse strains of the pathogen in cosmopolitan urban centers. The recent global movement and transmission history of 100 M. tuberculosis isolates was inferred from a molecular epidemiologic study of tuberculosis that spans 12 years. Genetic relationships among these isolates were deduced from the distribution of large genomic deletions, which were identified by DNA microarray and confirmed by PCR and sequence analysis. Phylogenetic analysis of these deletions indicates that they are unique event polymorphisms and that horizontal gene transfer is extremely rare in M. tuberculosis. In conjunction with the epidemiological data, phylogenies reveal three large phylogeographic regions. A host's region of origin is predictive of the strain of tuberculosis he or she carries, and this association remains strong even when transmission takes place in a cosmopolitan urban center outside of the region of origin. Approximate dating of the time since divergence of East Asian and Philippine clades of M. tuberculosis suggests that these lineages diverged centuries ago. Thus, associations between host and pathogen populations appear to be highly stable.

Indexed as

HumansMycobacterium tuberculosisPhylogenyPolymerase Chain ReactionSequence Deletion

Identifiers

PMID15041743
PMCPMC387341

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.