Evidence map›Paper›PMID 15041693›Full record

ArticleBiophysical journal2004

Longitudinal diffusion in retinal rod and cone outer segment cytoplasm: the consequence of cell structure.

David Holcman, Juan I Korenbrot

Abstract read
In one paragraph

Article in Biophysical journal, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Molecular basis for photoreceptor outer segment architecture.Progress in retinal and eye research · 2016
    Review
  10. Article
  11. Review
  12. Detection of single photons by toad and mouse rods.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

David HolcmanKeck Center for Theoretical Neurobiology and Department of Physiology, School of Medicine, University of California at San Francisco, San Francisco, California 94143, USA.
Juan I Korenbrot

Funding

MECHANISMS OF TRANSDUCTION IN RETINAL CONE PHOTORECEPTORR01EY005498 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KORENBROT, JUAN IGAL · 1985 to 2007
$2.6M
NEI NIH HHS EY05498NEI NIH HHS R01 EY005498NEI NIH HHS R56 EY005498
6 · The paper itself

Abstract

Excitation signals spread along photoreceptor outer segments away from the site of photon capture because of longitudinal diffusion of cGMP, a cytoplasmic second messenger. The quantitative features of longitudinal diffusion reflect the anatomical structure of the outer segment, known to be profoundly different in rod and cone photoreceptors. To explore how structural differences affect cytoplasmic diffusion and to assess whether longitudinal diffusion may contribute to the difference in signal transduction between photoreceptor types, we investigated, both theoretically and experimentally, the longitudinal diffusion of small, hydrophilic molecules in outer segments. We developed a new theoretical analysis to explicitly compute the longitudinal diffusion constant, Dl, in terms of outer segment structure. Using time-resolved fluorescence imaging we measured Dl of Alexa488 and lucifer yellow in intact, single cones and validated the theoretical analysis. We used numerical simulations of the theoretical model to investigate cGMP diffusion in outer segments of various species. At a given time interval, cGMP spreads further in rod than in cone outer segments of the same dimensions. Across all species, the spatial spread of cGMP at the peak of the dim light photocurrent is 3-5 microm in rod outer segments, regardless of their absolute size. Similarly the cGMP spatial spread is 0.7-1 microm in cone outer segments, independently of their dimensions.

Indexed as

Models, TheoreticalAnimalsBassCyclic GMPCytoplasmDiffusionFluorescent DyesIn Vitro TechniquesMembrane PotentialsRetinal Cone Photoreceptor CellsRetinal Rod Photoreceptor CellsSignal TransductionCyclic GMPFluorescent Dyes

Identifiers

PMID15041693
PMCPMC1304104

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.