Evidence map›Paper›PMID 15039324›Full record

ArticleInfection and immunity2004

Whole-genome DNA array analysis of the response of Borrelia burgdorferi to a bactericidal monoclonal antibody.

Julie M Anderton, Rafal Tokarz, Charles D Thill, Christopher J Kuhlow, Chad S Brooks, Darrin R Akins, Laura I Katona, Jorge L Benach

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Protective efficacy of mutant strains ofInfection and immunity · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Julie M AndertonCenter for Infectious Diseases and Department of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, New York 11794, USA.
Rafal Tokarz
Charles D Thill
Christopher J Kuhlow
Chad S Brooks
Darrin R Akins
Laura I Katona
Jorge L Benach
Stony Brook University · USUniversity of Oklahoma Health Sciences Center · US

Funding

USE OF 16S RIBOSOMAL DNA SEQUENCING TO EVALUATE NGUP20RR015564 · NCRR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI GILLASPY, ALLISON · 2000 to 2009
$18.5M
Antigen Specific Response to BorreliaR01AI027044 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI BENACH, JORGE L. · 1989 to 2020
$3.7M
ANTIGEN SPECIFIC RESPONSES TO BORRELIAR37AI027044 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI BENACH, JORGE L. · 1998 to 2007
$2.6M
Antigen Specific Responses to BorreliaR56AI027044 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI BENACH, JORGE L. · 2015 to 2015
$467k
MOLECULAR PATHOGENESIS TRAINING PROGRAMT32AI007364 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI IANDOLO, JOHN J. · 1993 to 2002
$295k
NCRR NIH HHS P20 RR015564NCRR NIH HHS RR-15564NIAID NIH HHS AI-07364NIAID NIH HHS AI-27044NIAID NIH HHS R01 AI027044NIAID NIH HHS R37 AI027044NIAID NIH HHS R56 AI027044NIAID NIH HHS T32 AI007364
6 · The paper itself

Abstract

Identification and characterization of genes that contribute to infection with Borrelia burgdorferi and, of those, genes that are targets of host responses is important for understanding the pathogenesis of Lyme disease. The complement-independent bactericidal monoclonal antibody (MAb) CB2 recognizes a carboxy-terminal, hydrophilic epitope of the outer surface protein B (OspB). CB2 kills B. burgdorferi by an unknown bactericidal mechanism. Upon binding of CB2 to OspB, differentially expressed gene products may be responsible for, or associated with, the death of the organism. A time course of the response of B. burgdorferi to CB2 was completed to analyze the differential gene expression in the bacteria over a period of visual morphological changes. Bacteria were treated with a sublethal concentration in which spirochetes were visibly distressed by the antibody but not lysed. Preliminary whole-genome DNA arrays at various time points within 1 h of incubation of B. burgdorferi with the antibody showed that most significant changes occurred at 25 min. Circular plasmid 32 (cp32)-encoded genes were active in this period of time, including the blyA homologs, phage holin system genes. DNA array data show that three blyA homologs were upregulated significantly, >/==" BORDER="0">2 standard deviations from the mean of the log ratios, and a P value of </=0.01. Quantitative real-time PCR analysis verified blyA and blyB upregulation over an 18- to 35-min time course. The hypothesis to test is whether the killing mechanism of CB2 is through uncontrolled expression of the blyA and blyB phage holin system.

Indexed as

Gene Expression ProfilingGenome, BacterialOligonucleotide Array Sequence AnalysisAntibodies, BacterialAntibodies, MonoclonalAntigens, BacterialBacterial Outer Membrane ProteinsBacterial ProteinsBorrelia burgdorferiGene Expression Regulation, BacterialHemolysin ProteinsHumansLyme DiseaseMembrane ProteinsAntibodies, BacterialAntibodies, MonoclonalAntigens, BacterialBacterial Outer Membrane ProteinsBacterial ProteinsBlyA protein, Borrelia burgdorferiBlyB protein, Borrelia burgdorferiHemolysin ProteinsMembrane ProteinsOspB protein, Borrelia burgdorferi

Identifiers

PMID15039324
PMCPMC375205
OpenAlexW2169353268

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.