Evidence map›Paper›PMID 15039224›Full record

ArticleThe American journal of pathology2004

Enhanced stem cell survival in familial adenomatous polyposis.

Kyoung-Mee Kim, Peter Calabrese, Simon Tavaré, Darryl Shibata

Open access · bronzeAbstract read
In one paragraph

Article in The American journal of pathology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 68 citations in OpenAlex.

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  18. APC and its modifiers in colon cancer.Advances in experimental medicine and biology · 2009
    Review
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kyoung-Mee KimDepartment of Pathology, University of Southern California Keck School of Medicine, Los Angeles, CA 90033, USA.
Peter Calabrese
Simon Tavaré
Darryl Shibata
University of Southern California · US

Funding

COMPUTATIONAL METHODS IN GENETIC EPIDEMIOLOGYR01GM058897 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI THOMAS, DUNCAN C. · 2000 to 2003
$2.0M
Computational Methods for Functional GenomicsR01GM067243 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TAVARE, SIMON · 2002 to 2005
$1.6M
HUMAN COLON STEM CELL AND CRYPT DYNAMICSR21DK061140 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI SHIBATA, DARRYL K · 2001 to 2002
$325k
NIDDK NIH HHS DK61140NIDDK NIH HHS R21 DK061140NIGMS NIH HHS GM58897NIGMS NIH HHS GM67243NIGMS NIH HHS R01 GM067243
6 · The paper itself

Abstract

Individuals with heterozygous germline adenomatous polyposis coli (APC) mutations or familial adenomatous polyposis (FAP) are born with normal appearing colons but later develop hundreds to thousands of polyps. Tumor progression apparently starts after somatic loss of the normal APC allele, but germline APC mutations may potentially alter niche stem cell survival through dominant-negative interactions or haploinsufficiency. Although morphologically occult, altered stem cell turnover or clonal evolution rates may be detected by measuring the diversity of crypt sequences, with greater diversity expected with longer lived stem cell lineages. Methylation pattern diversity (numbers of unique patterns per crypt) was higher in normal appearing crypts from four of five FAP colons compared to six non-FAP colons and one attenuated FAP colon. Simulations indicate higher FAP crypt diversity is consistent with slower clonal evolution from enhanced stem cell survival, either through increased stem cell numbers or decreased stem cell lineage extinction, which is predicted to increase progression rates to cancer. Enhanced stem cell survival was associated with APC mutations that remove some but not all catenin-binding repeats. Therefore, some APC mutations may be common in colorectal cancers because they confer occult pretumor "caretaker" and "gatekeeper" defects. FAP crypts accumulate more alterations from slower stem cell clonal evolution rather than increased error rates. In non-FAP crypts, enhanced stem cell survival conferred by somatic heterozygous APC mutations would favor fixation through occult clonal niche expansions. Heterozygous APC mutations may change stem cell survival during colorectal pretumor progression.

Indexed as

Cell Transformation, NeoplasticGenes, APCAdenomatous Polyposis ColiAdolescentAdultCell LineageClone CellsColonDNA MethylationDNA Mutational AnalysisFemaleHumansMaleMiddle AgedMutationStem Cells

Identifiers

PMID15039224
PMCPMC1615334
OpenAlexW2164139230

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.