ArticleThe Plant cell2004
Composition and structure of the centromeric region of rice chromosome 8.
Article in The Plant cell, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
54 citing papers in PubMed, 130 citations in OpenAlex.
- Whole-genome sequencing reveals a possible molecular basis of sex determination in the dioecious wild yam Dioscorea tokoro.PLoS genetics · 2026Article
- High-quality Gossypium hirsutum and Gossypium barbadense genome assemblies reveal the landscape and evolution of centromeres.Plant communications · 2024Article
- Toward Integrated Multi-Omics Intervention: Rice Trait Improvement and Stress Management.Frontiers in plant science · 2021Review
- The Nipponbare genome and the next-generation of rice genomics research in Japan.Rice (New York, N.Y.) · 2016Review
- Molecular cytogenetic analysis and genomic organization of major DNA repeats in castor bean (Ricinus communis L.).Molecular genetics and genomics : MGG · 2016Article
- De Novo Centromere Formation and Centromeric Sequence Expansion in Wheat and its Wide Hybrids.PLoS genetics · 2016Article
- High Quality Maize Centromere 10 Sequence Reveals Evidence of Frequent Recombination Events.Frontiers in plant science · 2016Article
- Sequential de novo centromere formation and inactivation on a chromosomal fragment in maize.Proceedings of the National Academy of Sciences of the United States of America · 2015Article
- Transposons play an important role in the evolution and diversification of centromeres among closely related species.Frontiers in plant science · 2015Article
- Differential genome evolution and speciation of Coix lacryma-jobi L. and Coix aquatica Roxb. hybrid guangxi revealed by repetitive sequence analysis and fine karyotyping.BMC genomics · 2014Article
- Centromere identity from the DNA point of view.Chromosoma · 2014Review
- Miniature inverted-repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa.Molecular biology and evolution · 2012Article
- Article
- Euchromatic subdomains in rice centromeres are associated with genes and transcription.The Plant cell · 2011Article
- Article
- Distinct evolutionary patterns of Oryza glaberrima deciphered by genome sequencing and comparative analysis.The Plant journal : for cell and molecular biology · 2011Article
- Asymmetric distribution of gene expression in the centromeric region of rice chromosome 5.Frontiers in plant science · 2011Article
- The compact Brachypodium genome conserves centromeric regions of a common ancestor with wheat and rice.Functional & integrative genomics · 2010Article
- The Ty1-copia families SALIRE and Cotzilla populating the Beta vulgaris genome show remarkable differences in abundance, chromosomal distribution, and age.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2010Article
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
21 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Understanding the organization of eukaryotic centromeres has both fundamental and applied importance because of their roles in chromosome segregation, karyotypic stability, and artificial chromosome-based cloning and expression vectors. Using clone-by-clone sequencing methodology, we obtained the complete genomic sequence of the centromeric region of rice (Oryza sativa) chromosome 8. Analysis of 1.97 Mb of contiguous nucleotide sequence revealed three large clusters of CentO satellite repeats (68.5 kb of 155-bp repeats) and >220 transposable element (TE)-related sequences; together, these account for approximately 60% of this centromeric region. The 155-bp repeats were tandemly arrayed head to tail within the clusters, which had different orientations and were interrupted by TE-related sequences. The individual 155-bp CentO satellite repeats showed frequent transitions and transversions at eight nucleotide positions. The 40 TE elements with highly conserved sequences were mostly gypsy-type retrotransposons. Furthermore, 48 genes, showing high BLAST homology to known proteins or to rice full-length cDNAs, were predicted within the region; some were close to the CentO clusters. We then performed a genome-wide survey of the sequences and organization of CentO and RIRE7 families. Our study provides the complete sequence of a centromeric region from either plants or animals and likely will provide insight into the evolutionary and functional analysis of plant centromeres.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.