Evidence map›Paper›PMID 15029491›Full record

ArticleMolecular genetics and genomics : MGG2004

Microarray analysis of brassinosteroids- and gibberellin-regulated gene expression in rice seedlings.

G-X Yang, A Jan, S-H Shen, J Yazaki, M Ishikawa, Z Shimatani, N Kishimoto, S Kikuchi, H Matsumoto, S Komatsu

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
7.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 64 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

G-X YangDepartment of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602 Tsukuba, Japan.
A Jan
S-H Shen
J Yazaki
M Ishikawa
Z Shimatani
N Kishimoto
S Kikuchi
H Matsumoto
S Komatsu
Institute of Agrobiological Sciences · JPInstitute of Applied Biochemistry · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In order to understand the molecular mechanisms by which two types of phytohormones, brassinosteroids (BRs) and gibberellins (GAs), regulate plant growth and development, a cDNA microarray was made containing 4000 clones randomly selected from a rice cDNA library constructed from RNA isolated from seedlings treated with GA(3) and brassinolide (BL). The array was then probed to identify differences in expression using labelled cDNAs prepared from treated and control seedlings. Nine and 29 unique cDNA clones were up-regulated, while 32 and 42 unique cDNA clones were down-regulated by BL and GA(3), respectively. The predicted products of these BL- and GA-regulated genes fall into such functional categories as signal transduction, transcription, metabolism, cellular organization, and defense or anti-stress responses. Northern analysis of the selected BL- and GA(3)-regulated genes not only confirmed their BL or GA(3) dose dependent expression, but also revealed significant differences in the degree of expression in different organs and in response to other phytohormones. These results demonstrate that BR and GA influence growth and development by coordinately regulating the expression of specific groups of genes.

Indexed as

Gene Expression ProfilingBrassinosteroidsCholestanolsGene Expression Regulation, PlantGene LibraryGenes, PlantGibberellinsOligonucleotide Array Sequence AnalysisOryzaPlant Growth RegulatorsRNA, PlantSeedlingsSteroids, HeterocyclicbrassinolideBrassinosteroidsCholestanolsGibberellinsPlant Growth RegulatorsRNA, PlantSteroids, Heterocyclic

Identifiers

PMID15029491
OpenAlexW1971051463

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.