Evidence map›Paper›PMID 15029246›Full record

ArticleThe EMBO journal2004

Structure, dynamics and interactions of p47, a major adaptor of the AAA ATPase, p97.

Xuemei Yuan, Peter Simpson, Ciaran McKeown, Hisao Kondo, Keiji Uchiyama, Russell Wallis, Ingrid Dreveny, Catherine Keetch, Xiaodong Zhang, Carol Robinson and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. AAA+ ATPase chaperone p97/VCPNature communications · 2024
    Article
  5. Article
  6. Article
  7. Review
  8. Deubiquitinases in cancer.Nature reviews. Cancer · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Versatile control of the CDC48 segregase by the plant UBX-containing (PUX) proteins.Computational and structural biotechnology journal · 2021
    Review
  15. An intrinsically disordered motif regulates the interaction between the p47 adaptor and the p97 AAA+ ATPase.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Cdc48 cofactor Shp1 regulates signal-induced SCFProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. p47 licenses activation of the immune deficiency pathway in the tickProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  18. Article
  19. UBXD Proteins: A Family of Proteins with Diverse Functions in Cancer.International journal of molecular sciences · 2016
    Review
  20. Altered cofactor regulation with disease-associated p97/VCP mutations.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Xuemei YuanDepartment of Biological Sciences, Wolfson Laboratories, Imperial College London, South Kensington, London, UK.
Peter Simpson
Ciaran McKeown
Hisao Kondo
Keiji Uchiyama
Russell Wallis
Ingrid Dreveny
Catherine Keetch
Xiaodong Zhang
Carol Robinson
Paul Freemont
Stephen Matthews
Imperial College London · GBUniversity of Cambridge · GBUniversity of Oxford · GB

Funding

Wellcome Trust 073908
6 · The paper itself

Abstract

p47 is a major adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is in regulation of membrane fusion events. Mono-ubiquitin recognition by p47 has also been shown to be crucial in the p97-p47-mediated Golgi membrane fusion events. Here, we describe the high-resolution solution structures of the N-terminal UBA domain and the central domain (SEP) from p47. The p47 UBA domain has the characteristic three-helix bundle fold and forms a highly stable complex with ubiquitin. We report the interaction surfaces of the two proteins and present a structure for the p47 UBA-ubiquitin complex. The p47 SEP domain adopts a novel fold with a betabetabetaalphaalphabeta secondary structure arrangement, where beta4 pairs in a parallel fashion to beta1. Based on biophysical studies, we demonstrate a clear propensity for the self-association of p47. Furthermore, p97 N binding abolishes p47 self-association, revealing the potential interaction surfaces for recognition of other domains within p97 or the substrate.

Indexed as

Protein Structure, SecondaryAdaptor Proteins, Signal TransducingAdenosine TriphosphatasesAmino Acid SequenceAnimalsHumansModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularNuclear ProteinsProtein FoldingProtein Structure, QuaternaryRatsSequence AlignmentUbiquitinAdaptor Proteins, Signal TransducingAdenosine TriphosphatasesNuclear Proteinsp97 ATPaseUbiquitin

Identifiers

PMID15029246
PMCPMC391063
OpenAlexW2008219605

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.