Evidence map›Paper›PMID 15028682›Full record

ArticleJournal of bacteriology2004

A conjugation-based system for genetic analysis of group II intron splicing in Lactococcus lactis.

Joanna R Klein, Yuqing Chen, Dawn A Manias, Jin Zhuo, Liang Zhou, Craig L Peebles, Gary M Dunny

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Journal of bacteriology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Joanna R KleinDepartment of Microbiology, University of Minnesota Medical School, Minneapolis, Minnesota 55455, USA.
Yuqing Chen
Dawn A Manias
Jin Zhuo
Liang Zhou
Craig L Peebles
Gary M Dunny
University of Minnesota Medical Center · USUniversity of Pittsburgh · US

Funding

MINNESOTA PAIN RESEARCH TRAINING PROGRAMT32DE007288 · NIDCR · UNIVERSITY OF MINNESOTA TWIN CITIES · PI HERZBERG, MARK C · 1996 to 2011
$8.8M
RESEARCH TRAINING IN PEDIATRIC INFECTIONS DISEASEST32HD007381 · NICHD · UNIVERSITY OF MINNESOTA TWIN CITIES · PI FERRIERI, PATRICIA · 1990 to 2004
$556k
NICHD NIH HHS T32 HD007381NIDCR NIH HHS T32 DE007288
6 · The paper itself

Abstract

The conjugative element pRS01 from Lactococcus lactis encodes the putative relaxase protein LtrB. The ltrB gene is interrupted by the functional group II intron Ll.ltrB. Accurate splicing of the two ltrB exons is required for synthesis of the mRNA encoding the LtrB conjugative relaxase and subsequent plasmid transfer. A conjugation-based genetic assay was developed to identify Ll.ltrB mutations that affect splicing. In this assay a nonsplicing, transfer-defective pRS01 derivative (pM1014) and a shuttle vector carrying the ltrB region, including the Ll.ltrB intron (pCOM9), are used. pCOM9 provides splicing-dependent complementation of the transfer defect of pM1014. Site-directed mutations within Ll.ltrB, either in the catalytic RNA or in the intron-encoded protein gene ltrA, were generated in the context of pCOM9. When these mutants were tested in the conjugation-based assay, significantly reduced mating was observed. Quantitative molecular analysis of in vivo splicing activity confirmed that the observed mating defects resulted from reduced splicing. Once the system was validated for the engineered mutants, random mutagenesis of the intron followed by genetic and molecular screening for splicing defects resulted in identification of point mutations that affect splicing.

Indexed as

Conjugation, GeneticRNA SplicingBacterial ProteinsBase SequenceDNA Transposable ElementsIntronsLactococcus lactisMolecular Sequence DataMutagenesisPlasmidsBacterial ProteinsDNA Transposable ElementsLtrB protein, Lactococcus lactis

Identifiers

PMID15028682
PMCPMC374396
OpenAlexW2155607438

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.