Evidence map›Paper›PMID 15024060›Full record

ArticleMolecular and cellular biology2004

Functional analysis of the Mad1-mSin3A repressor-corepressor interaction reveals determinants of specificity, affinity, and transcriptional response.

Shaun M Cowley, Richard S Kang, John V Frangioni, Jason J Yada, Alec M DeGrand, Ishwar Radhakrishnan, Robert N Eisenman

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. An MXD1-derived repressor peptide identifies noncoding mediators of MYC-driven cell proliferation.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Histone deacetylase (HDAC) 1 and 2 are essential for accurate cell division and the pluripotency of embryonic stem cells.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  9. An overview of MYC and its interactome.Cold Spring Harbor perspectives in medicine · 2014
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Shaun M CowleyFred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.
Richard S Kang
John V Frangioni
Jason J Yada
Alec M DeGrand
Ishwar Radhakrishnan
Robert N Eisenman

Funding

MYC ONCOPROTEIN FUNCTIONR37CA057138 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EISENMAN, ROBERT NEIL · 2003 to 2013
$8.0M
Structural Biology of the Sin3 Corepressor ComplexR01GM064715 · NIGMS · NORTHWESTERN UNIVERSITY · PI RADHAKRISHNAN, ISHWAR · 2002 to 2011
$2.4M
LOW-MOLECULAR WEIGHT LIGANDS FOR PROSTATE CANCERR33CA088245 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI FRANGIONI, JOHN V · 2002 to 2003
$1.5M
LOW-MOLECULAR WEIGHT LIGANDS FOR PROSTATE CANCERR21CA088245 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI FRANGIONI, JOHN V · 2000 to 2001
$328k
NCI NIH HHS R21 CA088245NCI NIH HHS R21/R33 CA-88245NCI NIH HHS R33 CA088245NCI NIH HHS R37 CA057138NCI NIH HHS R37CA57138NIGMS NIH HHS GM 64715NIGMS NIH HHS R01 GM064715
6 · The paper itself

Abstract

The recruitment of corepressors by DNA-bound repressors is likely to be a critical rate-limiting step in the transcriptional regulation of many genes. An excellent paradigm for such an interaction is the association of the basic helix-loop-helix zipper protein Mad1 with the corepressor mSin3A. When bound together, the Sin3 interaction domain (SID) of Mad1 forms extensive hydrophobic contacts with the four-helix bundle formed by the paired amphipathic helix 2 (PAH2) domain of mSin3A. Using the costructure to predict the principle residues required for binding, we have carried out an extensive mutational analysis to examine the Mad1 SID-mSin3A PAH2 interaction in vitro and in vivo. Bulky hydrophobic residues in the alpha1 (I308 and V311) and alpha2 (L329 and L332) helices of the PAH2 domain are necessary to accommodate the precise arrangement of bulky (L12) and short (A15 and A16) hydrophobic residues in the amphipathic Mad1 SID. We have also used phage display to derive an optimal SID, which shows an essentially identical arrangement of key residues. By manipulating these key residues, we have generated altered-specificity Mad1 SID mutants that bind only to a PAH2 domain with a reciprocal mutation, permitting us to demonstrate for the first time that these domains interact directly in vivo. We have also found that the integrity of the PAH1 domain affects the Mad1 SID-PAH2 interaction. It is conceivable that cross talk between different PAH domains and their binding partners helps to determine the subunit composition and order of assembly of mSin3A complexes.

Indexed as

Transcription, GeneticAmino Acid SequenceAnimalsCell Cycle ProteinsCell LineGenes, ReporterHumansModels, MolecularMutationNuclear ProteinsPhosphoproteinsProtein BindingProtein ConformationRecombinant Fusion ProteinsRepressor ProteinsSin3 Histone Deacetylase and Corepressor ComplexCell Cycle ProteinsMAD1L1 protein, humanNuclear ProteinsPhosphoproteinsRecombinant Fusion ProteinsRepressor ProteinsSIN3A transcription factorSin3 Histone Deacetylase and Corepressor ComplexTranscription Factors

Identifiers

PMID15024060
PMCPMC371107

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.