Evidence map›Paper›PMID 1502172›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1992

Sequencing heavy- and light-chain variable genes of single B-hybridoma cells by total enzymatic amplification.

A H Liu, G Creadon, L J Wysocki

Erratum issuedAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1992. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Silent development of memory progenitor B cells.Journal of immunology (Baltimore, Md. : 1950) · 2007
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

3 authors.

A H LiuDepartment of Pediatrics, National Jewish Center for Immunology and Respiratory Medicine, Denver, CO 80206.
G Creadon
L J Wysocki

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
ACADEMIC TRAINING PROGRAM IN PEDIATRIC PULMONARY DISEASET32HL007670 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI ABMAN, STEVEN HERBERT · 1988 to 2019
$5.9M
NCI NIH HHS P30CA46934NHLBI NIH HHS T2-HL07670A
6 · The paper itself

Abstract

We have devised a protocol to obtain accurate and complete sequences of the immunoglobulin heavy- and light-chain variable-region (VH and VL) genes of single B-hybridoma cells that express defined V genes. The amplification achieved ranges from 2 x 10(13)- to 1 x 10(14)-fold. Only one potential Taq DNA polymerase error was observed in 7590 nucleotides of sequence, thus permitting the identification of naturally occurring somatic mutations. The two-step nature of the amplification protocol provides sufficient DNA for a minimum of 160 sets of sequencing reactions of both the VH and VL genes from one cell without cloning. The amplification of relatively long segments of DNA in the first step of the protocol permits second-step amplification and sequencing of regions that flank VH and VL codons. Fractionating cellular lysates prior to the first step of amplification permits the separate amplification of V genes on opposite sister chromatids and possibly on opposite strands of the same DNA duplex. Accurate sequencing of VH and VL genes of defined germ-line origin that are expressed by single B cells taken directly from the animal is thus made feasible by this approach.

Indexed as

Genes, ImmunoglobulinAnimalsBase SequenceB-LymphocytesDNAHybridomasImmunoglobulin Heavy ChainsImmunoglobulin Light ChainsImmunoglobulin Variable RegionMolecular Sequence DataOligodeoxyribonucleotidesPolymerase Chain ReactionDNAImmunoglobulin Heavy ChainsImmunoglobulin Light ChainsImmunoglobulin Variable RegionOligodeoxyribonucleotides

Identifiers

PMID1502172
PMCPMC49760

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.