ArticlePlant physiology2004
Genome-wide identification of Arabidopsis coiled-coil proteins and establishment of the ARABI-COIL database.
Article in Plant physiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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Who cites it
34 citing papers in PubMed, 69 citations in OpenAlex.
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- Genome-Wide Identification and Expression Analysis ofPlants (Basel, Switzerland) · 2024Article
- CRWN nuclear lamina components maintain the H3K27me3 landscape and promote successful reproduction in Arabidopsis.The New phytologist · 2024Article
- Five questions on the cell-to-cell movement ofBBA advances · 2024Article
- CRWN nuclear lamina components maintain the H3K27me3 landscape and promote successful reproduction in Arabidopsis.bioRxiv : the preprint server for biology · 2023Article
- RPG interacts with E3-ligase CERBERUS to mediate rhizobial infection in Lotus japonicus.PLoS genetics · 2023Article
- The plant nuclear lamina proteins NMCP1 and NMCP2 form a filamentous network with lateral filament associations.Journal of experimental botany · 2021Article
- Robustification of GWAS to explore effective SNPs addressing the challenges of hidden population stratification and polygenic effects.Scientific reports · 2021Article
- The nuclear envelope in higher plant mitosis and meiosis.Nucleus (Austin, Tex.) · 2019Review
- CCBuilder 2.0: Powerful and accessible coiled-coil modeling.Protein science : a publication of the Protein Society · 2018Article
- ZmpTAC12 binds single-stranded nucleic acids and is essential for accumulation of the plastid-encoded polymerase complex in maize.The New phytologist · 2015Article
- Evolutionary patterns in coiled-coils.Genome biology and evolution · 2015Article
- The intriguing plant nuclear lamina.Frontiers in plant science · 2014Review
- Localization of Daucus carota NMCP1 to the nuclear periphery: the role of the N-terminal region and an NLS-linked sequence motif, RYNLRR, in the tail domain.Frontiers in plant science · 2014Article
- NMCP/LINC proteins: putative lamin analogs in plants?Plant signaling & behavior · 2013Review
- Article
- Structural attributes for the recognition of weak and anomalous regions in coiled-coils of myosins and other motor proteins.BMC research notes · 2012Article
- Functional interaction between the Arabidopsis orthologs of spindle assembly checkpoint proteins MAD1 and MAD2 and the nucleoporin NUA.Plant molecular biology · 2012Article
- Conserved and diversified gene families of monovalent cation/h(+) antiporters from algae to flowering plants.Frontiers in plant science · 2012Article
- The Arabidopsis TRM1-TON1 interaction reveals a recruitment network common to plant cortical microtubule arrays and eukaryotic centrosomes.The Plant cell · 2012Article
Corrections and comments
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Increasing evidence demonstrates the importance of long coiled-coil proteins for the spatial organization of cellular processes. Although several protein classes with long coiled-coil domains have been studied in animals and yeast, our knowledge about plant long coiled-coil proteins is very limited. The repeat nature of the coiled-coil sequence motif often prevents the simple identification of homologs of animal coiled-coil proteins by generic sequence similarity searches. As a consequence, counterparts of many animal proteins with long coiled-coil domains, like lamins, golgins, or microtubule organization center components, have not been identified yet in plants. Here, all Arabidopsis proteins predicted to contain long stretches of coiled-coil domains were identified by applying the algorithm MultiCoil to a genome-wide screen. A searchable protein database, ARABI-COIL (http://www.coiled-coil.org/arabidopsis), was established that integrates information on number, size, and position of predicted coiled-coil domains with subcellular localization signals, transmembrane domains, and available functional annotations. ARABI-COIL serves as a tool to sort and browse Arabidopsis long coiled-coil proteins to facilitate the identification and selection of candidate proteins of potential interest for specific research areas. Using the database, candidate proteins were identified for Arabidopsis membrane-bound, nuclear, and organellar long coiled-coil proteins.
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