Evidence map›Paper›PMID 15016909›Full record

ArticleNucleic acids research2004

Putative involvement of the histone acetyltransferase Tip60 in ribosomal gene transcription.

Kalipso Halkidou, Ian R Logan, Susan Cook, David E Neal, Craig N Robson

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. The Epigenetic Pathways to Ribosomal DNA Silencing.Microbiology and molecular biology reviews : MMBR · 2016
    Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. MYST-family histone acetyltransferases: beyond chromatin.Cellular and molecular life sciences : CMLS · 2011
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. TRRAP and GCN5 are used by c-Myc to activate RNA polymerase III transcription.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  20. FOXP3 interactions with histone acetyltransferase and class II histone deacetylases are required for repression.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kalipso HalkidouProstate Research Group, School of Surgical and Reproductive Sciences, The Medical School, University of Newcastle upon Tyne, Newcastle upon Tyne NE2 4HH, UK.
Ian R Logan
Susan Cook
David E Neal
Craig N Robson
Newcastle University · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tip60 is a histone acetyltransferase (HAT) implicated in a wide range of cellular functions, including mRNA synthesis and DNA repair. In the present report we propose a model based on which Tip60 is actively involved in ribosomal gene transcription through acetylation of UBF, a ribosomal specific transcription factor, as well as through its direct recruitment to the human ribosomal gene promoter, as shown by chromatin immunoprecipitation experiments. Electron microscopy studies revealed that Tip60 resides in sites of active rDNA transcription within the nucleolus, while it co-localizes with UBF as shown by confocal microscopy. In addition, in vivo transcription assays demonstrated that the nucleolar fraction of Tip60 localizes to sites of newly synthesized rRNA. Finally, functional assays established that Tip60 complexes with, and targets UBF for acetylation. The present study underlines the importance of acetylation in rDNA transcription and directly implicates Tip60 in the process of ribosomal gene transcription.

Indexed as

Genes, rRNATranscription, GeneticAcetyltransferasesAnimalsCell LineCell NucleolusDNA-Directed RNA PolymerasesDNA, RibosomalHistone AcetyltransferasesHistonesHumansInterphaseLysine Acetyltransferase 5Pol1 Transcription Initiation Complex ProteinsPromoter Regions, GeneticRNA, RibosomalAcetyltransferasesDNA-Directed RNA PolymerasesDNA, RibosomalHistone AcetyltransferasesHistonesKAT5 protein, humanLysine Acetyltransferase 5Pol1 Transcription Initiation Complex ProteinsRNA, Ribosomaltranscription factor UBF

Identifiers

PMID15016909
PMCPMC390321
OpenAlexW2006101051

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.