ArticleFunctional & integrative genomics2004
An integrated approach for comparative mapping in rice and barley with special reference to the Rph16 resistance locus.
Article in Functional & integrative genomics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed, 62 citations in OpenAlex.
- Discovering common and population-specific QTLs for leaf rust resistance in different Barley populations.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- BED domain-containing NLR from wild barley confers resistance to leaf rust.Plant biotechnology journal · 2021Article
- High Resolution Mapping ofFrontiers in plant science · 2019Article
- Fine analysis of a genomic region involved in resistance to Mediterranean corn borer.BMC plant biology · 2018Article
- Article
- Identification of a novel major locus for gray leaf spot resistance in Italian ryegrass (Lolium multiflorum Lam.).BMC plant biology · 2014Article
- Conserved synteny-based anchoring of the barley genome physical map.Functional & integrative genomics · 2013Article
- Genomics-based high-resolution mapping of the BaMMV/BaYMV resistance gene rym11 in barley (Hordeum vulgare L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Inheritance and molecular mapping of a gene conferring seedling resistance against Puccinia hordei in the barley cultivar Ricardo.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- High resolution mapping of Dense spike-ar (dsp.ar) to the genetic centromere of barley chromosome 7H.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Fine mapping and comparative genomics integration of two quantitative trait loci controlling resistance to powdery mildew in a Spanish barley landrace.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Fine mapping and syntenic integration of the semi-dwarfing gene sdw3 of barley.Functional & integrative genomics · 2010Article
- High-resolution mapping of the Brassica napus Rfp restorer locus using Arabidopsis-derived molecular markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Structure-function analysis of the barley genome: the gene-rich region of chromosome 2HL.Functional & integrative genomics · 2009Article
- Genetic and physical mapping of a high recombination region on chromosome 7H(1) in barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates.Functional & integrative genomics · 2008Article
- Development of genic-microsatellite markers for sorghum staygreen QTL using a comparative genomic approach with rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Analysis of the barley chromosome 2 region containing the six-rowed spike gene vrs1 reveals a breakdown of rice-barley micro collinearity by a transposition.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2007Article
- An integrated approach for the comparative analysis of a multigene family: the nicotianamine synthase genes of barley.Functional & integrative genomics · 2007Article
- Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2006Article
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The accumulated sequence information of the almost completed rice genome and the transcriptome of other cereals provide an excellent starting point for comparative genome analysis. We performed targeted synteny-based marker saturation for the Rph16 leaf rust resistance locus in barley by extensively exploiting these newly available resources. Out of a collection of over 320,000 public barley ESTs 309 non-redundant candidate syntenic clones have been identified for this region in a two-step in silico selection procedure. For mapping, 54 barley cDNA-clones were selected due to the even distribution of their homologs on a putatively collinear 3-Mb rice BAC contig. Out of these, 97% (30) of the polymorphic markers could be genetically assigned in collinearity to the target region in barley and a set of 11 markers was integrated into an rph16 high-resolution map. Although, the collinear target region of rice does not contain an obvious candidate gene for rph16 the results demonstrate the potential of the presented procedure to efficiently utilize EST resources for synteny-based marker saturation. The systematic genome-wide exploitation of the increasing sequence data resources will strongly improve our current view of genome conservation and likely facilitate a synteny-based isolation of genes conserved across cereal species.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.