Evidence map›Paper›PMID 15010621›Full record

ArticlePlant molecular biology2003

Characterisation of Pt MYB1, an R2R3-MYB from pine xylem.

Astrid Patzlaff, Lisa J Newman, Christian Dubos, Ross W Whetten, Caroline Smith, Stephanie McInnis, Michael W Bevan, Ronald R Sederoff, Malcolm M Campbell

Abstract read
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In one paragraph

Article in Plant molecular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 140 citations in OpenAlex.

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  15. Review
  16. The BpMYB4 Transcription Factor FromFrontiers in plant science · 2020
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  17. Article
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  19. SiMYB3 in Foxtail Millet (International journal of molecular sciences · 2019
    Article
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Astrid PatzlaffDepartment of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK.
Lisa J Newman
Christian Dubos
Ross W Whetten
Caroline Smith
Stephanie McInnis
Michael W Bevan
Ronald R Sederoff
Malcolm M Campbell
University of Oxford · GBNorth Carolina State University · USJohn Innes Centre · GBNorwich Research Park · GBUniversity of Bristol · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A cDNA encoding a member of the R2R3-MYB family of transcription factors was cloned from a library constructed from differentiating Pinus taeda (loblolly pine) xylem RNA. This MYB family member, Pinus taeda MYB1 (PtMYB1), was most abundantly expressed in differentiating xylem, as assessed by both ribonuclease protection assays, and by northern blot analysis with poly(A)-enriched RNA. Similar to other plant R2R3-MYB family members, recombinant Pt MYB1 protein was able to bind to AC elements in electrophoretic mobility shift assays (EMSAs). AC elements are DNA motifs rich in adenosine and cytosine that have been implicated in the xylem-localised regulation of genes encoding lignin biosynthetic enzymes. Pt MYB1 not only bound to AC elements, but was also able to induce AC-element-dependent shifts in the electrophoretic mobility of a plant promoter that contains three AC elements, the minimal PHENYLALANINE AMMONIA-LYASE 2 (PAL2) promoter from Phaseolus vulgaris. Transcriptional activation assays conducted using yeast showed that Pt MYB1 also activated transcription, and that it did so in an AC-element-dependent fashion. Pt MYB1 also activated transcription from the minimal PAL2 promoter in plant cells in an AC-element-dependent fashion, as revealed by transient transcriptional activation assays with microprojectile-bombarded tobacco NT-1 cells. Taken together, these finding are consistent with the hypothesis that Pt MYB1 may regulate transcription from cis -acting AC elements in pine xylem.

Indexed as

Adenosine TriphosphateBase SequenceBinding SitesCloning, MolecularCytidine TriphosphateDNA, ComplementaryElectrophoretic Mobility Shift AssayMolecular Sequence DataOligonucleotidesPhylogenyPinusPlant ProteinsPlant StructuresProtein BindingProto-Oncogene Proteins c-mybRecombinant Fusion ProteinsAdenosine TriphosphateCytidine TriphosphateDNA, ComplementaryOligonucleotidesPlant ProteinsProto-Oncogene Proteins c-mybRecombinant Fusion Proteins

Identifiers

PMID15010621
OpenAlexW1979573697

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.