Evidence map›Paper›PMID 15007728›Full record

ArticleHuman genetics2004

Novel microsatellite markers and single nucleotide polymorphisms refine the tylosis with oesophageal cancer (TOC) minimal region on 17q25 to 42.5 kb: sequencing does not identify the causative gene.

Joanne E Langan, Charlotte G Cole, Elisabeth J Huckle, Shaun Byrne, Fiona E McRonald, Lynn Rowbottom, Anthony Ellis, Joan M Shaw, Irene M Leigh, David P Kelsell and 3 more

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Article in Human genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 40 citations in OpenAlex.

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  15. Rearrangements of the telomeric region of mouse chromosome 11 in Pre-B ABL/MYC cells revealed by mBANDing, spectral karyotyping, and fluorescence in-situ hybridization with a subtelomeric probe.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2004
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Joanne E LanganMolecular Genetics and Oncology Group, Department of Clinical Dental Sciences, University of Liverpool, Edward's Building, Daulby Street, L69 3GN, Liverpool, UK.
Charlotte G Cole
Elisabeth J Huckle
Shaun Byrne
Fiona E McRonald
Lynn Rowbottom
Anthony Ellis
Joan M Shaw
Irene M Leigh
David P Kelsell
Ian Dunham
John K Field
Janet M Risk
University of Liverpool · GBWellcome Sanger Institute · GBQueen Mary University of London · GBRoyal Liverpool University Hospital · GBRoy Castle Lung Cancer Foundation · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tylosis (focal non-epidermolytic palmoplantar keratoderma) is associated with the early onset of squamous cell oesophageal cancer in three families. Linkage and haplotype analyses have previously mapped the tylosis with oesophageal cancer ( TOC) locus to a 500-kb region on chromosome 17q25 that has also been implicated in sporadically occurring squamous cell oesophageal cancer. In the current study, 17 additional putative microsatellite markers were identified within this 500-kb region by using sequence data and seven of these were shown to be polymorphic in the UK and US families. In addition, our complete sequence analysis of the non-repetitive parts of the TOC minimal region identified 53 novel and six known single nucleotide polymorphisms (SNPs) in one or both of these families. Further fine mapping of the TOC disease locus by haplotype analysis of the seven polymorphic markers and 21 of the 59 SNPs allowed the reduction of the minimal region to 42.5 kb. One known and two putative genes are located within this region but none of these genes shows tylosis-specific mutations within their protein-coding regions. Alternative mechanisms of disease gene action must therefore be considered.

Indexed as

Chromosome MappingPedigreeBase SequenceChromosomes, Human, Pair 17DNA PrimersElectrophoresis, Polyacrylamide GelEsophageal NeoplasmsHaplotypesHumansKeratoderma, Palmoplantar, DiffuseMicrosatellite RepeatsPolymorphism, Single NucleotideSequence Analysis, DNAUnited KingdomUnited StatesDNA Primers

Identifiers

PMID15007728
OpenAlexW2015174021

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.