Evidence map›Paper›PMID 15007387›Full record

ArticleOncogene2004

CpG methylation in the Fhit regulatory region: relation to Fhit expression in murine tumors.

Shuang-Yin Han, Dimitrios Iliopoulos, Teresa Druck, Gulnur Guler, Clinton J Grubbs, Michael Pereira, Zhongqiu Zhang, Ming You, Ronald A Lubet, Louise Y Y Fong and 1 more

Open access · greenAbstract read
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In one paragraph

Article in Oncogene, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 2 pooled it
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 2 syntheses or guidelines pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 2 countries.

Shuang-Yin HanKimmel Cancer Center, Thomas Jefferson University, 1008 BLSB, 233S. 10th Street, Philadelphia, PA 19107, USA.
Dimitrios Iliopoulos
Teresa Druck
Gulnur Guler
Clinton J Grubbs
Michael Pereira
Zhongqiu Zhang
Ming You
Ronald A Lubet
Louise Y Y Fong
Kay Huebner
Sidney Kimmel Cancer Center · USThomas Jefferson University · USWashington University in St. Louis · USHacettepe University · TRNational Cancer Institute · USUniversity of Alabama at Birmingham · USUniversity of Toledo Medical Center · US

Funding

X-Ray Crystallography and Macromolecular CharacterizationP30CA056036 · NCI · THOMAS JEFFERSON UNIVERSITY · PI DANIEL P SILVER · 1995 to 2026
$94.8M
ROLE OF THE FHIT LOCUS IN ENVIRONMENTAL CARCINOGENESISP01CA077738 · NCI · THOMAS JEFFERSON UNIVERSITY · PI HUEBNER, KAY · 2000 to 2004
$5.6M
NCI NIH HHS CA56036NCI NIH HHS CA77738NCI NIH HHS N01-CN-15113NCI NIH HHS N01-CN-15128NCI NIH HHS N01-CN-25007
6 · The paper itself

Abstract

To determine if: (1) 5' CpG island methylation is related to Fhit inactivation; (2) there are tumor or carcinogen-specific methylation patterns, we examined 35 CpG sites in the promoter, exon and intron 1 of the mouse Fhit gene. In primary tumors of lung, urinary bladder and tongue, induced by different carcinogens, 15-35% of sites were methylated, with specific methylation patterns associated with each cancer type, suggesting cancer- or tissue-specific methylation patterns. The methylation patterns were associated with reduced Fhit expression, as determined by immunohistochemical analyses. Methylation of rat Fhit 5' CpGs in mammary adenocarcinomas, detected by methylation specific PCR amplification, also correlated with reduced gene expression. Thus, there was an overall association between promoter/exon 1 methylation and decreased Fhit expression. In contrast, in cancer-derived cell lines 70-95% of the CpG sites were methylated. This is the first detailed study of the relationship between Fhit 5' CpG island methylation and Fhit expression in murine tumors, our main models for preclinical cancer studies, and provides evidence that loss of Fhit expression and methylation are correlated in these mouse models and these models will be useful to examine the complex relationships among gene expression, methylation patterns and organ specificity.

Indexed as

Genes, RegulatorAcid Anhydride HydrolasesAnimalsBis(5'-adenosyl)triphosphataseDNA MethylationGene ExpressionHumansImmunohistochemistryMiceNeoplasm ProteinsNeoplasmsAcid Anhydride HydrolasesBis(5'-adenosyl)triphosphataseNeoplasm Proteins

Identifiers

PMID15007387
OpenAlexW2070262397

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.