Evidence map›Paper›PMID 15006759›Full record

ArticleApplied and environmental microbiology2004

Characterization of a thermostable L-arabinose (D-galactose) isomerase from the hyperthermophilic eubacterium Thermotoga maritima.

Dong-Woo Lee, Hyeung-Jin Jang, Eun-Ah Choe, Byoung-Chan Kim, Sang-Jae Lee, Seong-Bo Kim, Young-Ho Hong, Yu-Ryang Pyun

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 137 citations in OpenAlex.

  1. Review
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  5. Trends in lactose-derived bioactives: synthesis and purification.Systems microbiology and biomanufacturing · 2022
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  7. Exploring a Highly D-Galactose Specific L-Arabinose Isomerase FromFrontiers in bioengineering and biotechnology · 2020
    Article
  8. Article
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  14. Article
  15. Facile Enzymatic Synthesis of Ketoses.Angewandte Chemie (International ed. in English) · 2015
    Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Dong-Woo LeeDepartment of Biotechnology and Bioproducts Research Center, College of Engineering, Yonsei University, Seoul 120-749, Korea.
Hyeung-Jin Jang
Eun-Ah Choe
Byoung-Chan Kim
Sang-Jae Lee
Seong-Bo Kim
Young-Ho Hong
Yu-Ryang Pyun
Yonsei University · KRNational Institute on Aging · USUniversity of Massachusetts Amherst · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The araA gene encoding L-arabinose isomerase (AI) from the hyperthermophilic bacterium Thermotoga maritima was cloned and overexpressed in Escherichia coli as a fusion protein containing a C-terminal hexahistidine sequence. This gene encodes a 497-amino-acid protein with a calculated molecular weight of 56,658. The recombinant enzyme was purified to homogeneity by heat precipitation followed by Ni(2+) affinity chromatography. The native enzyme was estimated by gel filtration chromatography to be a homotetramer with a molecular mass of 232 kDa. The purified recombinant enzyme had an isoelectric point of 5.7 and exhibited maximal activity at 90 degrees C and pH 7.5 under the assay conditions used. Its apparent K(m) values for L-arabinose and D-galactose were 31 and 60 mM, respectively; the apparent V(max) values (at 90 degrees C) were 41.3 U/mg (L-arabinose) and 8.9 U/mg (D-galactose), and the catalytic efficiencies (k(cat)/K(m)) of the enzyme were 74.8 mM(-1).min(-1) (L-arabinose) and 8.5 mM(-1).min(-1) (D-galactose). Although the T. maritima AI exhibited high levels of amino acid sequence similarity (>70%) to other heat-labile mesophilic AIs, it had greater thermostability and higher catalytic efficiency than its mesophilic counterparts at elevated temperatures. In addition, it was more thermostable in the presence of Mn(2+) and/or Co(2+) than in the absence of these ions. The enzyme carried out the isomerization of D-galactose to D-tagatose with a conversion yield of 56% for 6 h at 80 degrees C.

Indexed as

Aldose-Ketose IsomerasesAmino Acid SequenceBase SequenceCationsCloning, MolecularDNA, BacterialEnzyme StabilityGene ExpressionGenes, BacterialHot TemperatureHydrogen-Ion ConcentrationKineticsMolecular Sequence DataMolecular WeightSequence Homology, Amino AcidThermotoga maritimaAldose-Ketose IsomerasesCationsDNA, BacterialL-arabinose isomerase

Identifiers

PMID15006759
PMCPMC368370
OpenAlexW2125915762

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.