Evidence map›Paper›PMID 15004066›Full record

ArticleJournal of clinical microbiology2004

Optimization of quantitative detection of cytomegalovirus DNA in plasma by real-time PCR.

Michael Boeckh, MeeiLi Huang, James Ferrenberg, Terry Stevens-Ayers, Laurence Stensland, W Garrett Nichols, Lawrence Corey

Abstract readComparative Study
In one paragraph

Article in Journal of clinical microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed.

  1. Trial
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  4. A Modified Intensive Strategy to Prevent Cytomegalovirus Disease in Seropositive Umbilical Cord Blood Transplantation Recipients.Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation · 2018
    Trial
  5. Trial
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  8. Etanercept plus topical corticosteroids as initial therapy for grade one acute graft-versus-host disease after allogeneic hematopoietic cell transplantation.Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation · 2014
    Trial
  9. An artesunate-containing antimalarial treatment regimen did not suppress cytomegalovirus viremia.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2013
    Trial
  10. Trial
  11. TNF-inhibition with etanercept for graft-versus-host disease prevention in high-risk HCT: lower TNFR1 levels correlate with better outcomes.Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation · 2012
    Trial
  12. Trial
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  14. Vaccine prevention of maternal cytomegalovirus infection.The New England journal of medicine · 2009
    Trial
  15. Trial
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  17. Article
  18. Article
  19. Review
  20. Article

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Michael BoeckhFred Hutchinson Cancer Research Center and the University of Washington, Seattle, Washington 98109-1024, USA. mboeckh@FHCRC.org
MeeiLi Huang
James Ferrenberg
Terry Stevens-Ayers
Laurence Stensland
W Garrett Nichols
Lawrence Corey

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
VIRUS-MEDIATED MYELOSUPPRESSIONP01CA018029 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STEPHANIE J LEE · 1985 to 2026
$128.4M
HIV SHEDDING AND EVOLUTIONP01HD040540 · NICHD · UNIVERSITY OF WASHINGTON · PI COOMBS, ROBERT W. · 2001 to 2006
$7.5M
RECONSTITUTION OF CMV IMMUNITY IN HIV-INFECTED HOSTSR01AI041754 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI RIDDELL, STANLEY R · 1997 to 2001
$1.8M
SUBCLINICAL CMV INFECTION AFTER MARROW TRANSPLANTATIONK23AI001839 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI NICHOLS, WILLIAM G · 2000 to 2004
$775k
NCI NIH HHS CA15704NCI NIH HHS CA18029NCI NIH HHS P01 CA018029NCI NIH HHS P30 CA015704NIAID NIH HHS AI01839-01NIAID NIH HHS AI41754NIAID NIH HHS K23 AI001839NICHD NIH HHS HD40540NICHD NIH HHS P01 HD040540
6 · The paper itself

Abstract

Previous studies have shown that detection of cytomegalovirus (CMV) DNA in plasma is less sensitive than the antigenemia assay for CMV surveillance in blood. In 1,983 blood samples, plasma PCR assays with three different primer sets (UL125 alone, UL126 alone, and UL55/UL123-exon 4) were compared to the pp65 antigenemia assay and blood cultures. Plasma PCR detected CMV more frequently in blood specimens than either the antigenemia assay or cultures, but of the three PCR assays, the double-primer assay (UL55/UL123-exon 4) performed best with regard to sensitivity, specificity, and predictive values compared to antigenemia: 122 of 151 antigenemia-positive samples were detected (sensitivity, 80.1%), and there were 122 samples that were PCR positive-antigenemia negative (specificity, 93%). Samples with discrepant results had a low viral load (median, 0.5 cells per slide; 1,150 copies per ml) and were often obtained from patients receiving antiviral therapy. CMV could be detected by other methods in 15 of 29 antigenemia positive-PCR negative samples compared to 121 of 122 PCR positive-antigenemia negative samples (P < 0.001). On a per-subject basis, 21 of 25 patients (antigenemia positive-PCR negative) and all 57 (PCR positive-antigenemia negative) could be confirmed at different time points during follow-up. The higher sensitivity of the double-primer assay resulted in earlier detection compared to antigenemia in a time-to-event analysis of 42 CMV-seropositive stem cell transplant recipients, and two of three patients with CMV disease who were antigenemia negative were detected by plasma PCR prior to the onset of disease. Interassay variability was low, and the dynamic range was >5 log(10). Automated DNA extraction resulted in high reproducibility, accurate CMV quantitation (R = 0.87, P < 0.001), improved sensitivity, and increased speed of sample processing. Thus, primer optimization and improved DNA extraction techniques resulted in a plasma-based PCR assay that is significantly more sensitive than pp65 antigenemia and blood cultures for detection of CMV in blood specimens.

Indexed as

Antigens, ViralAntiviral AgentsBase SequenceBronchoalveolar Lavage FluidCytomegalovirusCytomegalovirus InfectionsDNA PrimersDNA, ViralEnzyme-Linked Immunosorbent AssayHumansPhosphoproteinsPolymerase Chain ReactionPredictive Value of TestsReproducibility of ResultsSensitivity and SpecificityStem Cell TransplantationAntigens, ViralAntiviral Agentscytomegalovirus matrix protein 65kDaDNA PrimersDNA, ViralPhosphoproteinsViral Matrix Proteins

Identifiers

PMID15004066
PMCPMC356812

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.