Evidence map›Paper›PMID 15004050›Full record

ArticleJournal of clinical microbiology2004

Characterization of toxin A-negative, toxin B-positive Clostridium difficile isolates from outbreaks in different countries by amplified fragment length polymorphism and PCR ribotyping.

Renate J van den Berg, Eric C J Claas, Duddy H Oyib, Corné H W Klaassen, Lenie Dijkshoorn, Jon S Brazier, Ed J Kuijper

Open access · greenAbstract readMulticenter Study
In one paragraph

Article in Journal of clinical microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 112 citations in OpenAlex.

  1. Article
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  3. Rapid visualization ofFrontiers in microbiology · 2023
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  4. Production ofFrontiers in cellular and infection microbiology · 2021
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  6. High-Level Resistance of ToxigenicInfection and drug resistance · 2020
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  7. Microorganisms · 2019
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  8. Article
  9. Emerging microbes & infections · 2019
    Review
  10. Diagnosis ofIranian journal of microbiology · 2018
    Article
  11. Genomic Study of aFrontiers in microbiology · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. The emergence of Clostridium difficile PCR-ribotype 001 in Slovakia.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2015
    Article
  16. Article
  17. Article
  18. Article
  19. Vaccines against Clostridium difficile.Human vaccines & immunotherapeutics · 2014
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Renate J van den BergDepartment of Medical Microbiology, Center of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands. r.j.van_den_berg.mm@lumc.nl
Eric C J Claas
Duddy H Oyib
Corné H W Klaassen
Lenie Dijkshoorn
Jon S Brazier
Ed J Kuijper
Canisius-Wilhelmina Ziekenhuis · NLLeiden University Medical Center · NLUniversity Hospital of Wales · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clinical Clostridium difficile isolates of patients with diarrhea or pseudomembranous colitis usually produce both toxin A and toxin B, but an increasing number of reports mention infections due to toxin A-negative, toxin B-positive (A(-)/B(+)) strains. Thirty-nine clinical toxin A(-)/B(+) isolates, and 12 other unrelated isolates were obtained from Canada, the United States, Poland, the United Kingdom, France, Japan, and The Netherlands. The isolates were investigated by high-resolution genetic fingerprinting by use of amplified fragment length polymorphism (AFLP) and two well-described PCR ribotyping methods. Furthermore, the toxin profile and clindamycin resistance were determined. Reference strains of C. difficile representing 30 known serogroups were also included in the analysis. AFLP discriminated 29 types among the reference strains, whereas the two PCR ribotyping methods distinguished 25 and 26 types. The discriminatory power of AFLP and PCR ribotyping among 12 different unrelated isolates was similar. Typing of 39 toxin A(-)/B(+) isolates revealed 2 AFLP types and 2 and 3 PCR ribotypes. Of 39 toxin A(-)/B(+) isolates, 37 had PCR ribotype 017/20 and AFLP type 20 (95%). A deletion of 1.8 kb was seen in 38 isolates, and 1 isolate had a deletion of approximately 1.7 kb in the tcdA gene, which encodes toxin A. Clindamycin resistance encoded by the erm(B) gene was found in 33 of 39 toxin A(-)/B(+) isolates, and in 2 of the 12 unrelated isolates (P < 0.001, chi-square test). We conclude that clindamycin-resistant C. difficile toxin A(-)/B(+) strain (PCR ribotype 017/20, AFLP type 20, serogroup F) has a clonal worldwide spread.

Indexed as

Bacterial ProteinsBacterial ToxinsClostridioides difficileDisease OutbreaksDNA FingerprintingDNA PrimersEnterocolitis, PseudomembranousEnterotoxinsEuropeGeographyHumansJapanNorth AmericaPhylogenyPolymerase Chain ReactionBacterial ProteinsBacterial ToxinsDNA PrimersEnterotoxinstcdA protein, Clostridium difficiletoxB protein, Clostridium difficile

Identifiers

PMID15004050
PMCPMC356898
OpenAlexW2167097830

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.