ArticleGenome biology2004
Visualization of the phylogenetic content of five genomes using dekapentagonal maps.
Article in Genome biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
10 citing papers in PubMed, 24 citations in OpenAlex.
- Horizontal gene transfer in Saccharomyces cerevisiae and other Saccharomycotina yeasts: a review.World journal of microbiology & biotechnology · 2026Review
- Inferring horizontal gene transfer.PLoS computational biology · 2015Article
- Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes.Molecular biology and evolution · 2014Article
- Quartet analysis of putative horizontal gene transfer in Crenarchaeota.Journal of molecular evolution · 2014Article
- An automated approach for the identification of horizontal gene transfers from complete genomes reveals the rhizome of Rickettsiales.BMC evolutionary biology · 2012Article
- The cyanobacterial genome core and the origin of photosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2006Article
- Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli.Genome biology · 2006Article
- Ancient gene duplications and the root(s) of the tree of life.Protoplasma · 2005Article
- PentaPlot: a software tool for the illustration of genome mosaicism.BMC bioinformatics · 2005Article
- Evolution of cytochrome bc complexes: from membrane-anchored dehydrogenases of ancient bacteria to triggers of apoptosis in vertebrates.Biochimica et biophysica actaReview
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The methods presented here summarize phylogenetic relationships of genomes in visually appealing and informative figures. Dekapentagonal maps depict phylogenetic information for orthologous genes present in five genomes, and provide a pre-screen for putatively horizontally transferred genes. If the majority of individual gene phylogenies are unresolved, bipartition histograms provide a means of uncovering and analyzing the plurality consensus. Analyses of genomes representing five photosynthetic bacterial phyla and of the prokaryotic contributions to the eukaryotic cell illustrate the utility of the methods.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.