Evidence map›Paper›PMID 15001710›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

The E47 transcription factor negatively regulates CD5 expression during thymocyte development.

Yang Yang, Christopher H Contag, Dean Felsher, Catherine M Shachaf, Yuan Cao, Leonard A Herzenberg, Leonore A Herzenberg, James W Tung

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. CD5-dependent CK2 activation pathway regulates threshold for T cell anergy.Journal of immunology (Baltimore, Md. : 1950) · 2012
    Article
  7. Review
  8. Article
  9. Nucleoprotein structure of the CD4 locus: implications for the mechanisms underlying CD4 regulation during T cell development.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yang YangDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Christopher H Contag
Dean Felsher
Catherine M Shachaf
Yuan Cao
Leonard A Herzenberg
Leonore A Herzenberg
James W Tung
Stanford University · USPediatrics and Genetics · US

Funding

Spatiotemporal Analysis of Neoplasia in Animal ModelsR24CA092862 · NCI · STANFORD UNIVERSITY · PI CONTAG, CHRISTOPHER H · 2001 to 2006
$4.4M
VISIBLE ANIMAL MODELS OF NEOPLASTIC DISEASER33CA088303 · NCI · STANFORD UNIVERSITY · PI CONTAG, CHRISTOPHER H · 2000 to 2002
$1.3M
X RAY INACTIVATION OF HUMAN COLORECTAL CANCER CELLSR01CA085610 · NCI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI DEWEY, WILLIAM C · 2001 to 2003
$481k
NCI NIH HHS R01 CA085610NCI NIH HHS R01-CA85610NCI NIH HHS R24 CA092862NCI NIH HHS R24-CA92862NCI NIH HHS R33-CA88303NHLBI NIH HHS HL06855
6 · The paper itself

Abstract

The expression of CD5 increases progressively as thymocytes mature. We have shown that CD5 expression is controlled by a tissue-specific regulatory promoter located upstream of the CD5 translation start sites. Deletion of this regulatory promoter, which contains three potential transcription factor binding sites (CCAAT, kappa E2, and ets) reduces the promoter activity to basal level. Of these sites, only ets proved essential for CD5 expression in T cell lines. Here, we introduce a role for the E47 transcription factor and the CD5 promoter kappa E2 site in regulating CD5 expression during thymocyte development. Using T cell lines, we show that (i) mutation of the kappa E2 site in the CD5 regulatory promoter results in a significant elevation of CD5 promoter activity; (ii) the E47 transcription factor binds to the kappa E2 site; and (iii) overexpression of E47 inhibits CD5 expression. We then show, in high-dimensional fluorescence-activated cell sorting studies with primary thymocytes at successive developmental stages, that (i) intracellular E47 levels decrease as surface CD5 expression increases; (ii) E47 expression is down-regulated and CD5 expression is correspondingly up-regulated in DN3 thymocytes in RAG-2-deficient mice injected with anti-CD3 to mimic pre-T cell receptor stimulation; and (iii) E47 expression is down-regulated and CD5 expression is up-regulated when double positive thymocytes are stimulated in vitro with anti-CD3. Based on these data, we propose that E47 negatively regulates CD5 expression by interacting with the kappa E2 site in the CD5 regulatory promoter and that decreases in E47 in response to developmental signals are critical to the progressive increase in CD5 expression as thymocytes mature.

Indexed as

Promoter Regions, GeneticAnimalsCD5 AntigensDNA-Binding ProteinsGenes, ReporterMiceTCF Transcription FactorsThymus GlandTranscription Factor 7-Like 1 ProteinTranscription FactorsCD5 AntigensDNA-Binding ProteinsTcf7l1 protein, mouseTCF Transcription FactorsTranscription Factor 7-Like 1 ProteinTranscription Factors

Identifiers

PMID15001710
PMCPMC374341
OpenAlexW2035634881

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.