Evidence map›Paper›PMID 14996844›Full record

ArticleThe Journal of biological chemistry2004

Structural characterization of the SARS-coronavirus spike S fusion protein core.

Brian Tripet, Megan W Howard, Michael Jobling, Randall K Holmes, Kathryn V Holmes, Robert S Hodges

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 129 papers.

0numbers the graph read from it
0cells of the map it votes in
129citing papers in PubMed
13.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

129 citing papers in PubMed, 201 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Will Peptides Help to Stop COVID-19?Biochemistry. Biokhimiia · 2022
    Review
  8. Review
  9. Perspective on the status and behaviour of SARS-CoV-2 in soil.Saudi journal of biological sciences · 2022
    Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Nanotherapeutics for treating coronavirus diseases.Journal of drug delivery science and technology · 2021
    Review
  16. Review
  17. Review
  18. Review
  19. Review
  20. Article

69 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Brian TripetDepartment of Biochemistry and Molecular Genetics, University of Colorado Health Sciences Center, Denver, CO 80262, USA.
Megan W Howard
Michael Jobling
Randall K Holmes
Kathryn V Holmes
Robert S Hodges
University of Colorado Anschutz Medical Campus · USUniversity of Colorado Health · US

Funding

MOLECULAR GENETICS OF THE RECEPTOR FOR MVHR01AI025231 · NIAID · UNIVERSITY OF COLORADO DENVER · PI HOLMES, KATHRYN V · 1988 to 2007
$3.5M
Synthetic Peptide Consensus Sequence Vaccine DevelopmentR01AI048717 · NIAID · UNIVERSITY OF COLORADO DENVER · PI HODGES, ROBERT S · 2002 to 2005
$1.5M
NIAID NIH HHS R01 AI 25231NIAID NIH HHS R01 AI 48717
6 · The paper itself

Abstract

The spike (S) glycoprotein of coronaviruses mediates viral entry into host cells. It is a type 1 viral fusion protein that characteristically contains two heptad repeat regions, denoted HR-N and HR-C, that form coiled-coil structures within the ectodomain of the protein. Previous studies have shown that the two heptad repeat regions can undergo a conformational change from their native state to a 6-helix bundle (trimer of dimers), which mediates fusion of viral and host cell membranes. Here we describe the biophysical analysis of the two predicted heptad repeat regions within the severe acute respiratory syndrome coronavirus S protein. Our results show that in isolation the HR-N region forms a stable alpha-helical coiled coil that associates in a tetrameric state. The HR-C region in isolation formed a weakly stable trimeric coiled coil. When mixed together, the two peptide regions (HR-N and HR-C) associated to form a very stable alpha-helical 6-stranded structure (trimer of heterodimers). Systematic peptide mapping showed that the site of interaction between the HR-N and HR-C regions is between residues 916-950 of HR-N and residues 1151-1185 of HR-C. Additionally, interchain disulfide bridge experiments showed that the relative orientation of the HR-N and HR-C helices in the complex was antiparallel. Overall, the structure of the hetero-stranded complex is consistent with the structures observed for other type 1 viral fusion proteins in their fusion-competent state.

Indexed as

Amino Acid SequenceBase SequenceCircular DichroismDNA PrimersEscherichia coliHemagglutinins, ViralMembrane GlycoproteinsMolecular Sequence DataMolecular WeightPeptide FragmentsProtein ConformationRestriction MappingSevere acute respiratory syndrome-related coronavirusSpike Glycoprotein, CoronavirusViral Envelope ProteinsDNA PrimersHemagglutinins, ViralMembrane GlycoproteinsPeptide FragmentsSpike Glycoprotein, Coronavirusspike glycoprotein, SARS-CoVspike protein, mouse hepatitis virusViral Envelope Proteins

Identifiers

PMID14996844
PMCPMC8060857
OpenAlexW2031014666

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.