Evidence map›Paper›PMID 14996789›Full record

ArticleJournal of bacteriology2004

Chimeric nature of two plasmids of Hafnia alvei encoding the bacteriocins alveicins A and B.

John E Wertz, Margaret A Riley

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 31 citations in OpenAlex.

  1. The Molecular Weaponry Produced by the BacteriumMolecules (Basel, Switzerland) · 2022
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. The genus Hafnia: from soup to nuts.Clinical microbiology reviews · 2006
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

John E WertzDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut 06520, USA. john.wertz@yale.edu
Margaret A Riley
Yale University · US

Funding

MOLECULAR EVOLUTION OF ENTERIC BACTERIOCINSR01GM058433 · NIGMS · YALE UNIVERSITY · PI RILEY, MARGARET A. · 1999 to 2002
$879k
NIGMS NIH HHS GM58433-02
6 · The paper itself

Abstract

The complete nucleotide sequences of two bacteriocin-encoding plasmids isolated from Hafnia alvei (pAlvA and pAlvB) were determined. Both plasmids resemble ColE1-type replicons and carry mobilization genes, as well as colicin-like bacteriocin operons. These bacteriocins appear to be chimeras consisting of translocation domains from Tol-dependent colicins, unique binding domains, and killing and immunity domains similar to those of the pore-forming colicin Ia. Just as is found for colicin Ia, these H. alvei bacteriocins (alveicins) lack lysis genes. The alveicins are unusually small at 408 and 358 amino acids for alveicin A and B, respectively, which would make alveicin B the smallest pore-forming bacteriocin yet discovered. The pattern of nucleotide substitution in the alveicins suggests that the dominant forces in the evolution of their killing domains and immunity genes are neutral mutation and random genetic drift rather than diversifying selection, which has been implicated in the evolution of other colicins. Five of six bacteriocinogenic isolates of H. alvei were found to carry plasmids identical to pAlvA. Comparisons of the levels of nucleotide divergence in five housekeeping genes to the levels of divergence in their respective plasmids led us to conclude that pAlvA is transferring laterally through the H. alvei population relatively rapidly.

Indexed as

Recombination, GeneticAmino Acid SequenceBacteriocin PlasmidsBacteriocinsDNA, BacterialFungal ProteinsGenetic DriftHafnia alveiMolecular Sequence DataMutationOperonSequence Analysis, DNABacteriocinsDNA, BacterialFungal ProteinsTOL protein, Neurospora crassa

Identifiers

PMID14996789
PMCPMC355955
OpenAlexW2115526679

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.