Evidence map›Paper›PMID 14993281›Full record

ArticleMolecular and cellular biology2004

A novel retinoic acid-responsive element regulates retinoic acid-induced BLR1 expression.

Jianrong Wang, Andrew Yen

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Retinoid Chemoprevention: Who Can Benefit?Current pharmacology reports · 2015
    Article
  9. Article
  10. PBX1 is a favorable prognostic biomarker as it modulates 13-cis retinoic acid-mediated differentiation in neuroblastoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2014
    Article
  11. Article
  12. Article
  13. Modeling and analysis of retinoic acid induced differentiation of uncommitted precursor cells.Integrative biology : quantitative biosciences from nano to macro · 2011
    Article
  14. Article
  15. Article
  16. Regulation of adult hematopoietic stem cells fate for enhanced tissue-specific repair.Molecular therapy : the journal of the American Society of Gene Therapy · 2009
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jianrong WangDepartment of Biomedical Sciences, Cornell University, Ithaca, New York 14853, USA.
Andrew Yen
Cornell University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mechanism of action of retinoic acid (RA) is of broad relevance to cell and developmental biology, nutrition, and cancer chemotherapy. RA is known to induce expression of the Burkitt's lymphoma receptor 1 (BLR1) gene which propels RA-induced cell cycle arrest and differentiation of HL-60 human myeloblastic leukemia cells, motivating the present analysis of transcriptional regulation of blr1 expression by RA. The RA-treated HL-60 cells used here expressed all RA receptor (RAR) and retinoid X receptor (RXR) subtypes (as detected by Northern analysis) except RXRgamma. Treatment with RAR- and RXR-selective ligands showed that RARalpha synergized with RXRalpha to transcriptionally activate blr1 expression. A 5'-flanking region capable of supporting RA-induced blr1 activation in HL-60 cells was found to contain a 205-bp sequence in the distal portion that was necessary for transcriptional activation by RA. Within this sequence DNase I footprinting revealed that RA induced binding of a nuclear protein complex to an element containing two GT boxes. Electromobility shift assays (EMSAs) and supershift assays showed that this element bound recombinant RARalpha and RXRalpha. Without RA there was neither complex binding nor transcriptional activation. Both GT boxes were needed for binding the complex, and mutation of either GT box caused the loss of transcriptional activation by RA. The ability of this cis-acting RAR-RXR binding element to activate transcription in response to RA also depended on downstream sequences where an octamer transcription factor 1 (Oct1) site and a nuclear factor of activated T cells (NFATc) site between this element and the transcriptional start, as well as a cyclic AMP response element binding factor (CREB) site between the transcriptional start and first exon of the blr1 gene, were necessary. Each of these sites bound its corresponding transcription factor. A transcription factor-transcription factor binding array analysis of nuclear lysate from RA-treated cells indicated several prominent RARalpha binding partners; among these, Oct1, NFATc3, and CREB2 were identified by competition EMSA and supershift and chromatin immunoprecipitation assays as components of the complex. RA upregulated expression of these three factors. In sum the results of the present study indicate that RA-induced expression of blr1 expression depends on a novel RA response element. This cis-acting element approximately 1 kb upstream of the transcriptional start consists of two GT boxes that bind RAR and RXR in a nuclear protein complex that also contains Oct1, NFATc3, and CREB2 bound to their cognate downstream consensus binding sites.

Indexed as

Nuclear ProteinsBase SequenceBinding SitesCyclic AMP Response Element-Binding ProteinDactinomycinDNA-Binding ProteinsDNA, NeoplasmGene Expression Regulation, NeoplasticHL-60 CellsHumansIn Vitro TechniquesModels, BiologicalMutagenesisNFATC Transcription FactorsOrganic Cation Transporter 1Promoter Regions, GeneticCXCR5 protein, humanCyclic AMP Response Element-Binding ProteinDactinomycinDNA-Binding ProteinsDNA, NeoplasmNFATC3 protein, humanNFATC Transcription FactorsNuclear ProteinsOrganic Cation Transporter 1Receptors, ChemokineReceptors, CXCR5Receptors, CytokineReceptors, Retinoic AcidRecombinant ProteinsRetinoid X ReceptorsRNA, MessengerRNA, NeoplasmTranscription FactorsTretinoin

Identifiers

PMID14993281
PMCPMC355834
OpenAlexW2171038620

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.