Evidence map›Paper›PMID 14993249›Full record

ArticleThe Journal of experimental medicine2004

Mapping of a functional recombination motif that defines isotype specificity for mu-->gamma3 switch recombination implicates NF-kappaB p50 as the isotype-specific switching factor.

Amy L Kenter, Robert Wuerffel, Carmen Dominguez, Ananth Shanmugam, Hongmei Zhang

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Impaired B cell development and function in the absence of IkappaBNS.Journal of immunology (Baltimore, Md. : 1950) · 2011
    Article
  5. Expression of IgA class switching gene in tonsillar mononuclear cells in patients with IgA nephropathy.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2011
    Article
  6. Article
  7. Roles of the NF-kappaB pathway in lymphocyte development and function.Cold Spring Harbor perspectives in biology · 2010
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Influence of switch region length on immunoglobulin class switch recombination.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Amy L KenterDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago 60612-7344, USA. star1@uic.edu
Robert Wuerffel
Carmen Dominguez
Ananth Shanmugam
Hongmei Zhang
Illinois College · USUniversity of Illinois Chicago · US

Funding

Factors and DNA Motifs Involved in Ig Class SwitchR01AI052400 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L · 2003 to 2012
$3.7M
CHARACTERIZING ISOTYPE SWITCHING USING SWITCH SUBSTRATESR01AI045045 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L. · 2000 to 2003
$1.1M
Class switch recombination during early B cell developmentR21AI106328 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L · 2013 to 2014
$424k
NIAID NIH HHS AI45045NIAID NIH HHS R01 AI045045NIAID NIH HHS R01 AI052400NIAID NIH HHS R21 AI106328
6 · The paper itself

Abstract

Ig class switch recombination (CSR) requires expression of activation-induced deaminase (AID) and production of germline transcripts to target S regions for recombination. However, the mechanism of CSR remains unclear. Here we show that an extrachromosomal S plasmid assay is AID dependent and that a single consensus repeat is both necessary and sufficient for isotype-specific CSR. Transfected switch substrates specific for mu-->gamma3 and mu-->gamma1 are stimulated to switch with lipopolysaccharide (LPS) alone or LPS and interleukin-4, respectively. An Sgamma3/Sgamma1 substrate containing only three Sgamma3-associated nucleotides reconstituted LPS responsiveness and permitted mapping of a functional recombination motif specific for mu-->gamma3 CSR. This functional recombination motif colocalized with a binding site for NF-kappaB p50, and p50 binding to this site was previously established. We show a p50 requirement for plasmid-based mu-->gamma3 CSR using p50-deficient B cells. Switch junctions from p50-deficient B cells showed decreased lengths of microhomology between Smu and Sgamma3 relative to wild-type cells, indicating a function for p50 in the mechanics of CSR. We note a striking parallel between the affects of p50 and Msh2 deficiency on Smu/Sgamma3 junctions. The data suggest that p50 may be the isotype-specific factor in mu-->gamma3 CSR and epistatic with Msh2.

Indexed as

Immunoglobulin Class SwitchingAICDA (Activation-Induced Cytidine Deaminase)AnimalsBase SequenceChromosome MappingCytidine DeaminaseDNAGene ExpressionImmunoglobulin gamma-ChainsImmunoglobulin IsotypesImmunoglobulin mu-ChainsIn Vitro TechniquesMiceMice, Inbred C57BLMice, KnockoutMolecular Sequence DataAICDA (Activation-Induced Cytidine Deaminase)Cytidine DeaminaseDNAImmunoglobulin gamma-ChainsImmunoglobulin IsotypesImmunoglobulin mu-ChainsNF-kappa BNF-kappa B p50 Subunit

Identifiers

PMID14993249
PMCPMC2213297
OpenAlexW2143372475

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.