ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2004
A new integrated genetic linkage map of the soybean.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 249 papers, 1 of them a synthesis that pooled it.
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Who cites it
249 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Multi-environment mapping and meta-analysis of 100-seed weight in soybean.Molecular biology reports · 2012Pooled it
- Identification of Novel Genetic Loci Related to 100-Seed Weight in the Korean Soybean Core Collection Using a Genome-Wide Association Study.International journal of molecular sciences · 2025Article
- Elevated Soybean Seed Oil Phenotype Associated with a Single Nucleotide Polymorphism inPlants (Basel, Switzerland) · 2025Article
- Cloning and characterization of soybean gene Fg4 encoding a novel flavonol 3-O-glucoside/galactoside rhamnosyltransferase.Molecular genetics and genomics : MGG · 2025Article
- A R2R3-MYB Transcription Factor ofInternational journal of molecular sciences · 2025Article
- RAD-Seq-derived SSR markers: a new paradigm for genetic analysis and construction of genetically improved production populations in Pinus koraiensis.BMC plant biology · 2025Article
- Depicting Soybean Diversity via Complementary Application of Three Marker Types.Plants (Basel, Switzerland) · 2025Article
- Mapping of quantitative trait loci and mining of candidate genes for seed viability in soybean [Frontiers in plant science · 2024Article
- Six Express Sequence Tag-Simple Sequence Repeat Primers Reveal Genetic Diversity in the Cultivars of ThreeCurrent issues in molecular biology · 2023Article
- Development of molecular inversion probes for soybean progeny genomic selection genotyping.The plant genome · 2023Article
- Mapping of a soybean rust resistance in PI 594756 at theMolecular breeding : new strategies in plant improvement · 2023Article
- Natural and artificial selection of multiple alleles revealed through genomic analyses.Frontiers in genetics · 2023Article
- Identification of candidate genes for soybean seed coat-related traits using QTL mapping and GWAS.Frontiers in plant science · 2023Article
- Mapping QTLs Controlling Soybean Rust Disease Resistance in Chiang Mai 5, an Induced Mutant Cultivar.Genes · 2022Article
- Development of SSR Markers Linked to Stress Responsive Genes along Tomato Chromosome 3 (Biotech (Basel (Switzerland)) · 2022Article
- Progress in soybean functional genomics over the past decade.Plant biotechnology journal · 2022Review
- Identification of quantitative trait loci (QTLs) and candidate genes for seed shape and 100-seed weight in soybean [Frontiers in plant science · 2022Article
- Identification of Candidate Genes and Genomic Selection for Seed Protein in Soybean Breeding Pipeline.Frontiers in plant science · 2022Article
- Tightly linked Rps12 and Rps13 genes provide broad-spectrum Phytophthora resistance in soybean.Scientific reports · 2021Article
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189 more citing papers are in PubMed but not listed here.
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A total of 391 simple sequence repeat (SSR) markers designed from genomic DNA libraries, 24 derived from existing GenBank genes or ESTs, and five derived from bacterial artificial chromosome (BAC) end sequences were developed. In contrast to SSRs derived from EST sequences, those derived from genomic libraries were a superior source of polymorphic markers, given that the mean number of tandem repeats in the former was significantly less than that of the latter ( P<0.01). The 420 newly developed SSRs were mapped in one or more of five soybean mapping populations: "Minsoy" x "Noir 1", "Minsoy" x "Archer", "Archer" x "Noir 1", "Clark" x "Harosoy", and A81-356022 x PI468916. The JoinMap software package was used to combine the five maps into an integrated genetic map spanning 2,523.6 cM of Kosambi map distance across 20 linkage groups that contained 1,849 markers, including 1,015 SSRs, 709 RFLPs, 73 RAPDs, 24 classical traits, six AFLPs, ten isozymes, and 12 others. The number of new SSR markers added to each linkage group ranged from 12 to 29. In the integrated map, the ratio of SSR marker number to linkage group map distance did not differ among 18 of the 20 linkage groups; however, the SSRs were not uniformly spaced over a linkage group, clusters of SSRs with very limited recombination were frequently present. These clusters of SSRs may be indicative of gene-rich regions of soybean, as has been suggested by a number of recent studies, indicating the significant association of genes and SSRs. Development of SSR markers from map-referenced BAC clones was a very effective means of targeting markers to marker-scarce positions in the genome.
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