Evidence map›Paper›PMID 14990510›Full record

ArticleBiophysical journal2004

Structural effects of an LQT-3 mutation on heart Na+ channel gating.

M Tateyama, H Liu, A-S Yang, J W Cormier, R S Kass

Open access · bronzeAbstract readComparative StudyEvaluation StudyValidation Study
In one paragraph

Article in Biophysical journal, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Functional cross-talk between phosphorylation and disease-causing mutations in the cardiac sodium channel NaProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  2. Article
  3. Detection of NaBiophysical journal · 2019
    Article
  4. Article
  5. Calmodulin limits pathogenic Na+ channel persistent current.The Journal of general physiology · 2017
    Article
  6. Cardiac Na Channels: Structure to Function.Current topics in membranes · 2016
    Article
  7. Review
  8. Article
  9. Solution structure of the NaV1.2 C-terminal EF-hand domain.The Journal of biological chemistry · 2009
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

M TateyamaDepartment of Pharmacology, College of Physicians and Surgeons of Columbia University, New York, New York 10032, USA.
H Liu
A-S Yang
J W Cormier
R S Kass
Columbia University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Computational methods that predict three-dimensional structures from amino acid sequences have become increasingly accurate and have provided insights into structure-function relationships for proteins in the absence of structural data. However, the accuracy of computational structural models requires experimental approaches for validation. Here we report direct testing of the predictions of a previously reported structural model of the C-terminus of the human heart Na(+) channel. We focused on understanding the structural basis for the unique effects of an inherited C-terminal mutation (Y1795C), associated with long QT syndrome variant 3 (LQT-3), that has pronounced effects on Na(+) channel inactivation. Here we provide evidence that this mutation, in which a cysteine replaces a tyrosine at position 1795 (Y1795C), enables the formation of disulfide bonds with a partner cysteine in the channel. Using the predictions of the model, we identify the cysteine and show that three-dimensional information contained in the sequence for the channel protein is necessary to understand the structural basis for some of the effects of the mutation. The experimental evidence supports the accuracy of the predicted structural model of the human heart Na(+) channel C-terminal domain and provides insight into a structural basis for some of the mutation-induced altered channel function underlying the disease phenotype.

Indexed as

Models, CardiovascularModels, ChemicalAmino Acid SubstitutionCell LineComputer SimulationHumansIon Channel GatingMembrane PotentialsModels, MolecularMutagenesis, Site-DirectedMutationMyocytes, CardiacNAV1.5 Voltage-Gated Sodium ChannelRecombinant ProteinsSequence Analysis, ProteinSodium ChannelsNAV1.5 Voltage-Gated Sodium ChannelRecombinant ProteinsSCN5A protein, humanSodium Channels

Identifiers

PMID14990510
PMCPMC1304018
OpenAlexW2077682807

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.