Evidence map›Paper›PMID 14988562›Full record

ArticleScience (New York, N.Y.)2004

Control of pancreas and liver gene expression by HNF transcription factors.

Duncan T Odom, Nora Zizlsperger, D Benjamin Gordon, George W Bell, Nicola J Rinaldi, Heather L Murray, Tom L Volkert, Jörg Schreiber, P Alexander Rolfe, David K Gifford and 3 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 624 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
624citing papers in PubMed, 1 pooled it
100.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

624 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,327 citations in OpenAlex.

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564 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Duncan T OdomWhitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, MA 02142, USA.
Nora Zizlsperger
D Benjamin Gordon
George W Bell
Nicola J Rinaldi
Heather L Murray
Tom L Volkert
Jörg Schreiber
P Alexander Rolfe
David K Gifford
Ernest Fraenkel
Graeme I Bell
Richard A Young
Massachusetts Institute of Technology · USWhitehead Institute for Biomedical Research · US

Funding

Transcriptional Regulatory Networks in Living CellsR01HG002668 · NHGRI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI YOUNG, RICHARD · 2003 to 2016
$17.9M
LIVER TISSUE PROCUREMENT AND DISTRIBUTION SYSTEMN01DK092310 · NIDDK · UNIVERSITY OF MINNESOTA TWIN CITIES · PI KRESINA, THOMAS · 1999 to 2000
$488k
NHGRI NIH HHS R01 HG002668NIDDK NIH HHS N01-DK-9-2310
6 · The paper itself

Abstract

The transcriptional regulatory networks that specify and maintain human tissue diversity are largely uncharted. To gain insight into this circuitry, we used chromatin immunoprecipitation combined with promoter microarrays to identify systematically the genes occupied by the transcriptional regulators HNF1alpha, HNF4alpha, and HNF6, together with RNA polymerase II, in human liver and pancreatic islets. We identified tissue-specific regulatory circuits formed by HNF1alpha, HNF4alpha, and HNF6 with other transcription factors, revealing how these factors function as master regulators of hepatocyte and islet transcription. Our results suggest how misregulation of HNF4alpha can contribute to type 2 diabetes.

Indexed as

DNA-Binding ProteinsGene Expression RegulationNuclear ProteinsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCarbohydrate MetabolismDiabetes Mellitus, Type 2Gene Expression ProfilingGenome, HumanGluconeogenesisHepatocyte Nuclear Factor 1Hepatocyte Nuclear Factor 1-alphaHepatocyte Nuclear Factor 1-betaHepatocyte Nuclear Factor 4Hepatocyte Nuclear Factor 6HepatocytesHomeodomain ProteinsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsDNA-Binding ProteinsHepatocyte Nuclear Factor 1Hepatocyte Nuclear Factor 1-alphaHepatocyte Nuclear Factor 1-betaHepatocyte Nuclear Factor 4Hepatocyte Nuclear Factor 6HNF1A protein, humanHNF1B protein, humanHNF4A protein, humanHomeodomain ProteinsMLX protein, humanNuclear ProteinsONECUT1 protein, humanPhosphoproteinsRNA Polymerase IITrans-ActivatorsTranscription Factors

Identifiers

PMID14988562
PMCPMC3012624
OpenAlexW2139025111

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.